[QE-users] Segmentation fault - invalid memory reference

杨世隆 yangshilong1997 at gmail.com
Sat Sep 21 20:39:22 CEST 2019


I put this line in the make.inc file and compile it again. The same thing happens again. Here is the backtrace
Backtrace for this error:
#0  0x10e79af3d
#1  0x10e79a34d
#2  0x7fff5a9f6b5c
#3  0x7fff2b315ec6
#0  0x109f15f3d
#1  0x109f1534d
#2  0x7fff5a9f6b5c
#3  0x7fff2b315ec6
#0  0x108ab0f3d
#1  0x108ab034d
#2  0x7fff5a9f6b5c
#3  0x7fff2b315ec6
#0  0x106c5df3d
#1  0x106c5d34d
#2  0x7fff5a9f6b5c
#3  0x7fff2b315ec6
#4  0x107cba0c1
#5  0x107b922e7
#4  0x10d9a20c1
#5  0x10d87a2e7
#6  0x10d87a72b
#4  0x1091100c1
#5  0x108fe82e7
#6  0x107b9272b
#4  0x105e600c1
#6  0x108fe872b
#5  0x105d382e7
#6  0x105d3872b
#7  0x10dbc4c93
#8  0x10d77cb93
#7  0x109332c93
#8  0x108eeab93
#9  0x109123336
#7  0x107edcc93
#8  0x107a94b93
#9  0x107ccd336
#7  0x106082c93
#8  0x105c3ab93
#9  0x10d9b5336
#10  0x10d9b60df
#11  0x10d88016a
#10  0x1091240df
#11  0x108fee16a
#9  0x105e73336
#12  0x10d921635
#13  0x10d72c6b2
#14  0x10dda593e
#12  0x10908f635
#13  0x108e9a6b2
#14  0x10951393e
#10  0x107cce0df
#11  0x107b9816a
#12  0x107c39635
#10  0x105e740df
#11  0x105d3e16a
#13  0x107a446b2
#14  0x1080bd93e
#12  0x105ddf635
#13  0x105bea6b2
#14  0x10626393e
--------------------------------------------------------------------------
Primary job  terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that process rank 3 with PID 0 on node nbp-146-110 exited on signal 11 (Segmentation fault: 11).
--------------------------------------------------------------------------
Error condition encountered during test: exit status = 139
Aborting

Shilong 
Student at Chemistry and Chemical Biology Department, Rutgers University
123 Bevier Rd.
Piscataway, NJ 08854, US

> On Sep 21, 2019, at 03:16, Paolo Giannozzi <p.giannozzi at gmail.com> wrote:
> 
> On Fri, Sep 20, 2019 at 11:10 PM 杨世隆 <yangshilong1997 at gmail.com <mailto:yangshilong1997 at gmail.com>> wrote:
> 
> 
> Backtrace for this error: 
> 
> And a long list for this backtrace (if it’s important, I will post it next time) 
> 
> it's important only if it says where (in which routine)  the error actually occurs, otherwise it is useless.
> 
> One of the many problems with Mac is that some optimized BLAS transform zdotc from a function to a subroutine, or something like that. Try to recompile with "DFLAGS= ...  -Dzdotc=zdotc_wrapper"
> 
> Paolo
> -- 
> Paolo Giannozzi, Dip. Scienze Matematiche Informatiche e Fisiche,
> Univ. Udine, via delle Scienze 208, 33100 Udine, Italy
> Phone +39-0432-558216, fax +39-0432-558222
> 
> _______________________________________________
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