[QE-users] Segmentation fault - invalid memory reference
杨世隆
yangshilong1997 at gmail.com
Sat Sep 21 20:39:22 CEST 2019
I put this line in the make.inc file and compile it again. The same thing happens again. Here is the backtrace
Backtrace for this error:
#0 0x10e79af3d
#1 0x10e79a34d
#2 0x7fff5a9f6b5c
#3 0x7fff2b315ec6
#0 0x109f15f3d
#1 0x109f1534d
#2 0x7fff5a9f6b5c
#3 0x7fff2b315ec6
#0 0x108ab0f3d
#1 0x108ab034d
#2 0x7fff5a9f6b5c
#3 0x7fff2b315ec6
#0 0x106c5df3d
#1 0x106c5d34d
#2 0x7fff5a9f6b5c
#3 0x7fff2b315ec6
#4 0x107cba0c1
#5 0x107b922e7
#4 0x10d9a20c1
#5 0x10d87a2e7
#6 0x10d87a72b
#4 0x1091100c1
#5 0x108fe82e7
#6 0x107b9272b
#4 0x105e600c1
#6 0x108fe872b
#5 0x105d382e7
#6 0x105d3872b
#7 0x10dbc4c93
#8 0x10d77cb93
#7 0x109332c93
#8 0x108eeab93
#9 0x109123336
#7 0x107edcc93
#8 0x107a94b93
#9 0x107ccd336
#7 0x106082c93
#8 0x105c3ab93
#9 0x10d9b5336
#10 0x10d9b60df
#11 0x10d88016a
#10 0x1091240df
#11 0x108fee16a
#9 0x105e73336
#12 0x10d921635
#13 0x10d72c6b2
#14 0x10dda593e
#12 0x10908f635
#13 0x108e9a6b2
#14 0x10951393e
#10 0x107cce0df
#11 0x107b9816a
#12 0x107c39635
#10 0x105e740df
#11 0x105d3e16a
#13 0x107a446b2
#14 0x1080bd93e
#12 0x105ddf635
#13 0x105bea6b2
#14 0x10626393e
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that process rank 3 with PID 0 on node nbp-146-110 exited on signal 11 (Segmentation fault: 11).
--------------------------------------------------------------------------
Error condition encountered during test: exit status = 139
Aborting
Shilong
Student at Chemistry and Chemical Biology Department, Rutgers University
123 Bevier Rd.
Piscataway, NJ 08854, US
> On Sep 21, 2019, at 03:16, Paolo Giannozzi <p.giannozzi at gmail.com> wrote:
>
> On Fri, Sep 20, 2019 at 11:10 PM 杨世隆 <yangshilong1997 at gmail.com <mailto:yangshilong1997 at gmail.com>> wrote:
>
>
> Backtrace for this error:
>
> And a long list for this backtrace (if it’s important, I will post it next time)
>
> it's important only if it says where (in which routine) the error actually occurs, otherwise it is useless.
>
> One of the many problems with Mac is that some optimized BLAS transform zdotc from a function to a subroutine, or something like that. Try to recompile with "DFLAGS= ... -Dzdotc=zdotc_wrapper"
>
> Paolo
> --
> Paolo Giannozzi, Dip. Scienze Matematiche Informatiche e Fisiche,
> Univ. Udine, via delle Scienze 208, 33100 Udine, Italy
> Phone +39-0432-558216, fax +39-0432-558222
>
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