[Q-e-developers] wrong library dependence
mersadkhan
mersadkhan at gmail.com
Sun Jan 8 12:20:10 CET 2017
Dears
So ashamed about but I have recompile it again and I found that in our
system some thing has changed. we compile QE with two different compiler
:openmpi and intelmpi. the library which is not found are for the
version which is compiled by openmpi and are not use in the version
which compiled by intelmpi. it was my fault and I have compiled again
and found it correctly. I am so sorry for this fault.
On 01/08/2017 01:56 PM, mersadkhan wrote:
>
> Dear
>
> I know that this is unusual and as a GNU/Linux fun and also 2 years
> work with QE it was so strange for me too but fro making it clear my
> commands come in below.
>
>
>
> |$uname -a $Linux test62.nhpcc.iut.ac.ir 2.6.32-504.16.2.el6.x86_64 #1
> SMP Wed Apr 22 06:48:29 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux
> $module load intel/compiler intel/mpi #this line load intel parallel
> studio 2015 |
> |$./configure FC=mpiifort CC=mpiicc F77=mpiifort MPIF90=mpiifort
> CPP="mpiicpc -E" --prefix=/opt/QuantumEspresso/5.4.0i
> --with-scalapack=intel --enable-openmp $make install |
> now if I command "ldd pw.x" in the bin directory which is in source
> the result is below and everything is ok:
>
> linux-vdso.so.1 => (0x00007fff35fff000)
> libmkl_scalapack_lp64.so =>
> /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_scalapack_lp64.so
> (0x00007fb07ad64000)
> libmkl_blacs_intelmpi_lp64.so =>
> /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so
> (0x00007fb07ab28000)
> libmkl_intel_lp64.so =>
> /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_intel_lp64.so
> (0x00007fb07a21b000)
> libmkl_intel_thread.so =>
> /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_intel_thread.so
> (0x00007fb078e80000)
> libmkl_core.so =>
> /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_core.so
> (0x00007fb0773db000)
> libmpifort.so.12 =>
> /opt/intel/impi/5.0.1.035/intel64/lib/libmpifort.so.12
> (0x00007fb07714e000)
> libmpi_mt.so.12 =>
> /opt/intel/impi/5.0.1.035/intel64/lib/libmpi_mt.so.12 (0x00007fb076a03000)
> libdl.so.2 => /lib64/libdl.so.2 (0x0000003d13c00000)
> librt.so.1 => /lib64/librt.so.1 (0x0000003d14400000)
> libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003d14000000)
> libm.so.6 => /lib64/libm.so.6 (0x0000003d13800000)
> libc.so.6 => /lib64/libc.so.6 (0x0000003d13400000)
> libgcc_s.so.1 => /opt/gcc/4.8.4/lib64/libgcc_s.so.1
> (0x00007fb0767d5000)
> /lib64/ld-linux-x86-64.so.2 (0x0000003d13000000)
> but if do same in the |/opt/QuantumEspresso/5.4.0i| result is below:
> linux-vdso.so.1 => (0x00007fff81194000)
> libmkl_scalapack_lp64.so =>
> /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_scalapack_lp64.so
> (0x00007f98ee9c9000)
> libmkl_intel_lp64.so =>
> /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_intel_lp64.so
> (0x00007f98ee0bd000)
> libmkl_intel_thread.so =>
> /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_intel_thread.so
> (0x00007f98ecd21000)
> libmkl_core.so =>
> /opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_core.so
> (0x00007f98eb27c000)
> libmpi_usempif08.so.11 => not found
> libmpi_usempi_ignore_tkr.so.6 => not found
> libmpi_mpifh.so.12 => not found
> libmpi.so.12 => /opt/intel/impi/5.0.1.035/intel64/lib/libmpi.so.12
> (0x00007f98eab34000)
> libm.so.6 => /lib64/libm.so.6 (0x0000003d13800000)
> libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003d14000000)
> libc.so.6 => /lib64/libc.so.6 (0x0000003d13400000)
> libgcc_s.so.1 => /opt/gcc/4.8.4/lib64/libgcc_s.so.1
> (0x00007f98ea91c000)
> libdl.so.2 => /lib64/libdl.so.2 (0x0000003d13c00000)
> librt.so.1 => /lib64/librt.so.1 (0x0000003d14400000)
> /lib64/ld-linux-x86-64.so.2 (0x0000003d13000000)
> As you see some library not found because I have not had them at all!!
>
>
> On 01/08/2017 12:51 PM, Filippo Spiga wrote:
>> Dear Mersad,
>>
>> On 8 Jan 2017, at 04:37, mersadkhan<mersadkhan at gmail.com> wrote:
>>> In version 5.4 If we use prefix for the path which we want install QE and compile it by INTEL parallel studio the binaries file in source is correct but when you command "make install" the binaries in prefix path will be depended on some library which there is not on system at all. I think this is a bug.
>> What you describe sounds very odd. The "make install" is a simple copy of binaries into a different location.
>>
>> I am quite sure the problem is not related to QE. Can you provide evidence of what you just described?
>>
>> Regards
>>
>> -- FS
>>
>> _______________________________________________
>> Q-e-developers mailing list
>> Q-e-developers at qe-forge.org
>> http://qe-forge.org/mailman/listinfo/q-e-developers
>
> --
> - no title specified
> Best regards
> Mersad Mostaghimi
>
> IRAN-Isfahan University of Technology
>
> Quantum Simulation Of Matter Laboratory - Physics Department
>
> National High Performance Computation Center
>
> Mail:mersadkhan at gmail.com <mailto:Mail%3Amersadkhan at gmail.com>
>
> Website:http://mmostaghimi.physics.iut.ac.ir/
>
> Phone:+98-913-269-0903
>
--
- no title specified
Best regards
Mersad Mostaghimi
IRAN-Isfahan University of Technology
Quantum Simulation Of Matter Laboratory - Physics Department
National High Performance Computation Center
Mail:mersadkhan at gmail.com <mailto:Mail%3Amersadkhan at gmail.com>
Website:http://mmostaghimi.physics.iut.ac.ir/
Phone:+98-913-269-0903
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