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<p>Dears </p>
<p>So ashamed about but I have recompile it again and I found that
in our system some thing has changed. we compile QE with two
different compiler :openmpi and intelmpi. the library which is
not found are for the version which is compiled by openmpi and are
not use in the version which compiled by intelmpi. it was my fault
and I have compiled again and found it correctly. I am so sorry
for this fault.<br>
</p>
<br>
<div class="moz-cite-prefix">On 01/08/2017 01:56 PM, mersadkhan
wrote:<br>
</div>
<blockquote
cite="mid:87fff41b-de39-57f4-cb21-b7cdd282e2e3@gmail.com"
type="cite">
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<p>Dear </p>
<p>I know that this is unusual and as a GNU/Linux fun and also 2
years work with QE it was so strange for me too but fro making
it clear my commands come in below.</p>
<p><br>
</p>
<br>
<pre dir="ltr"><code class="language-bash hljs "><span class="hljs-variable">$uname -a
$Linux</span> test62.nhpcc.iut.ac.ir <span class="hljs-number">2.6</span>.<span class="hljs-number">32</span>-<span class="hljs-number">504.16</span>.<span class="hljs-number">2</span>.el6.x86_64 <span class="hljs-comment">#1 SMP Wed Apr 22 06:48:29 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux</span>
<span class="hljs-variable">$module</span> load intel/compiler intel/mpi <span class="hljs-comment">#this line load intel parallel studio 2015
</span></code></pre>
<pre dir="ltr" id="yui_patched_v3_11_0_1_1483870024691_674"><code class="language-bash hljs " id="yui_patched_v3_11_0_1_1483870024691_672">$./configure FC=mpiifort CC=mpiicc F77=mpiifort MPIF90=mpiifort CPP=<span class="hljs-string">"mpiicpc -E"</span> --prefix=/opt/QuantumEspresso/<span class="hljs-number">5.4</span>.<span class="hljs-number">0</span>i --with-scalapack=intel --enable-openmp
$make install
</code></pre>
now if I command "ldd pw.x" in the bin directory which is in
source the result is below and everything is ok:<br>
<br>
<tt> linux-vdso.so.1 => (0x00007fff35fff000)</tt><tt><br>
</tt><tt> libmkl_scalapack_lp64.so =>
/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_scalapack_lp64.so
(0x00007fb07ad64000)</tt><tt><br>
</tt><tt> libmkl_blacs_intelmpi_lp64.so =>
/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so
(0x00007fb07ab28000)</tt><tt><br>
</tt><tt> libmkl_intel_lp64.so =>
/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_intel_lp64.so
(0x00007fb07a21b000)</tt><tt><br>
</tt><tt> libmkl_intel_thread.so =>
/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_intel_thread.so
(0x00007fb078e80000)</tt><tt><br>
</tt><tt> libmkl_core.so =>
/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_core.so
(0x00007fb0773db000)</tt><tt><br>
</tt><tt> libmpifort.so.12 =>
/opt/intel/impi/5.0.1.035/intel64/lib/libmpifort.so.12
(0x00007fb07714e000)</tt><tt><br>
</tt><tt> libmpi_mt.so.12 =>
/opt/intel/impi/5.0.1.035/intel64/lib/libmpi_mt.so.12
(0x00007fb076a03000)</tt><tt><br>
</tt><tt> libdl.so.2 => /lib64/libdl.so.2
(0x0000003d13c00000)</tt><tt><br>
</tt><tt> librt.so.1 => /lib64/librt.so.1
(0x0000003d14400000)</tt><tt><br>
</tt><tt> libpthread.so.0 => /lib64/libpthread.so.0
(0x0000003d14000000)</tt><tt><br>
</tt><tt> libm.so.6 => /lib64/libm.so.6 (0x0000003d13800000)</tt><tt><br>
</tt><tt> libc.so.6 => /lib64/libc.so.6 (0x0000003d13400000)</tt><tt><br>
</tt><tt> libgcc_s.so.1 =>
/opt/gcc/4.8.4/lib64/libgcc_s.so.1 (0x00007fb0767d5000)</tt><tt><br>
</tt><tt> /lib64/ld-linux-x86-64.so.2 (0x0000003d13000000)<br>
</tt>but if do same in the <code class="language-bash hljs "
id="yui_patched_v3_11_0_1_1483870024691_672">/opt/QuantumEspresso/<span
class="hljs-number">5.4</span>.<span class="hljs-number">0</span>i</code>
result is below:<br>
<tt> linux-vdso.so.1 => (0x00007fff81194000)</tt><tt><br>
</tt><tt> libmkl_scalapack_lp64.so =>
/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_scalapack_lp64.so
(0x00007f98ee9c9000)</tt><tt><br>
</tt><tt> libmkl_intel_lp64.so =>
/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_intel_lp64.so
(0x00007f98ee0bd000)</tt><tt><br>
</tt><tt> libmkl_intel_thread.so =>
/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_intel_thread.so
(0x00007f98ecd21000)</tt><tt><br>
</tt><tt> libmkl_core.so =>
/opt/intel/composer_xe_2015.0.090/mkl/lib/intel64/libmkl_core.so
(0x00007f98eb27c000)</tt><tt><br>
</tt><tt> libmpi_usempif08.so.11 => not found</tt><tt><br>
</tt><tt> libmpi_usempi_ignore_tkr.so.6 => not found</tt><tt><br>
</tt><tt> libmpi_mpifh.so.12 => not found</tt><tt><br>
</tt><tt> libmpi.so.12 =>
/opt/intel/impi/5.0.1.035/intel64/lib/libmpi.so.12
(0x00007f98eab34000)</tt><tt><br>
</tt><tt> libm.so.6 => /lib64/libm.so.6 (0x0000003d13800000)</tt><tt><br>
</tt><tt> libpthread.so.0 => /lib64/libpthread.so.0
(0x0000003d14000000)</tt><tt><br>
</tt><tt> libc.so.6 => /lib64/libc.so.6 (0x0000003d13400000)</tt><tt><br>
</tt><tt> libgcc_s.so.1 =>
/opt/gcc/4.8.4/lib64/libgcc_s.so.1 (0x00007f98ea91c000)</tt><tt><br>
</tt><tt> libdl.so.2 => /lib64/libdl.so.2
(0x0000003d13c00000)</tt><tt><br>
</tt><tt> librt.so.1 => /lib64/librt.so.1
(0x0000003d14400000)</tt><tt><br>
</tt><tt> /lib64/ld-linux-x86-64.so.2 (0x0000003d13000000)<br>
</tt>As you see some library not found because I have not had
them at all!!<br>
<br>
<br>
<div class="moz-cite-prefix">On 01/08/2017 12:51 PM, Filippo Spiga
wrote:<br>
</div>
<blockquote
cite="mid:4977A70B-EA83-4B08-B2A4-2B610AB2E0EF@quantum-espresso.org"
type="cite">
<pre wrap="">Dear Mersad,
On 8 Jan 2017, at 04:37, mersadkhan <a moz-do-not-send="true" class="moz-txt-link-rfc2396E" href="mailto:mersadkhan@gmail.com"><mersadkhan@gmail.com></a> wrote:
</pre>
<blockquote type="cite">
<pre wrap="">In version 5.4 If we use prefix for the path which we want install QE and compile it by INTEL parallel studio the binaries file in source is correct but when you command "make install" the binaries in prefix path will be depended on some library which there is not on system at all. I think this is a bug.
</pre>
</blockquote>
<pre wrap="">What you describe sounds very odd. The "make install" is a simple copy of binaries into a different location.
I am quite sure the problem is not related to QE. Can you provide evidence of what you just described?
Regards
-- FS
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<div class="P1">Best regards<br>
Mersad Mostaghimi<br>
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<p class="P1">IRAN-Isfahan University of Technology</p>
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