[QE-users] Problem while running QE

Piotr Szkudlarek p.szkudlarek at cent.uw.edu.pl
Tue Aug 29 08:49:53 CEST 2023


After installing some new packages on my machine I started getting such
error:

[p*@cn004 q3]$ mpiexec -n 24 --bind-to core /scientific/qe-7.2/bin/pw.x

                             -i relax.in > relax.out&
[1] 1184198
[p*@cn004 q3]$ [cn004:1184198] *** Process received signal ***
[cn004:1184198] Signal: Segmentation fault (11)
[cn004:1184198] Signal code: Address not mapped (1)
[cn004:1184198] Failing at address: (nil)
[cn004:1184198] [ 0] /usr/lib64/libc.so.6(+0x54df0)[0x7f72c86bedf0]
[cn004:1184198] [ 1] /usr/lib64/libc.so.6(+0xbe555)[0x7f72c8728555]
[cn004:1184198] [ 2]
/usr/lib64/pmix/mca_gds_hash.so(+0x3e09)[0x7f72c827be09]
[cn004:1184198] [ 3]
/usr/lib64/pmix/mca_gds_hash.so(+0x7d8f)[0x7f72c827fd8f]
[cn004:1184198] [ 4]
/usr/local/lib/libmca_common_dstore.so.1(+0x57f3)[0x7f72c82

                987f3]
[cn004:1184198] [ 5]
/usr/local/lib/libmca_common_dstore.so.1(pmix_common_dstor_

                register_job_info+0x286)[0x7f72c829dfd6]
[cn004:1184198] [ 6] /usr/lib64/libpmix.so.2(+0x59d7d)[0x7f72c8403d7d]
[cn004:1184198] [ 7]
/usr/lib64/libpmix.so.2(pmix_server_message_handler+0x52)[0

                x7f72c8404ad2]
[cn004:1184198] [ 8]
/usr/lib64/libpmix.so.2(pmix_ptl_base_process_msg+0x1de)[0x

                7f72c845089e]
[cn004:1184198] [ 9]
/usr/lib64/libevent_core-2.1.so.7(+0x21aa8)[0x7f72c8894aa8]
[cn004:1184198] [10]
/usr/lib64/libevent_core-2.1.so.7(event_base_loop+0x577)[0x

                7f72c88967b7]
[cn004:1184198] [11] /usr/lib64/libpmix.so.2(+0x657d6)[0x7f72c840f7d6]
[cn004:1184198] [12] /usr/lib64/libc.so.6(+0x9f802)[0x7f72c8709802]
[cn004:1184198] [13] /usr/lib64/libc.so.6(+0x3f450)[0x7f72c86a9450]
[cn004:1184198] *** End of error message ***
^C
[1]+  Segmentation fault      (core dumped) mpiexec -n 24 --bind-to core
/scient
                                        ific/qe-7.2/bin/pw.x -i relax.in >
relax.out
Am I right in assuming that the new installation could have removed some
packages?
Thanks in advance,
Piotr Szkudlarek
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