[QE-users] Very strange issue with ph.x in QE 7.1 which appeared OK in QE 6.3
Holzwarth, Natalie
natalie at wfu.edu
Tue Oct 25 22:50:02 CEST 2022
Dear Quantum Espresso Forum,
I have been using ph.x from QE 7.1 for quite a few low-symmetry materials
but for several simple fcc crystals, the program
fails to diagonalize the first non-gamma point phonon matrix (see 7.1G.out)
file. However I ran the same program with QE 6.3
which diagonalizes all of the phonon modes of NaCl. In this test, I am
using pseudos from SSSP. The input file is pasted below
and the two output files from ph.x are hopefully attached. Has anyone
else seen this issue?.
Thanks very much for any advice about this, Natalie
input file for vc-relax and phonon calculation:
------------------------------------------------------------
cat runQE.slurm
#!/bin/tcsh
#
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=32
#SBATCH --cpus-per-task=1
#SBATCH --account="natalieGrp"
#SBATCH --output="JOB-%j.o"
#SBATCH --error="JOB-%j.e"
#SBATCH --mail-user=natalie at wfu.edu
#SBATCH --mail-type=BEGIN,END,FAIL
#SBATCH --time=0-300:00:00
#SBATCH --mem=96gb
#SBATCH --partition=large
umask 002
# Note: SLURM has no batch input for cputime, excluding.
#
#
echo 'hostname' `/bin/hostname`
echo 'job directory' `pwd`
#
setenv TMPDIR /scratch/$SLURM_JOBID
echo 'Reset TMPDIR for this job to ' $TMPDIR
module load apps/quantum-espresso/7.1
set PW=pw.x
set PH=ph.x
#NOTE:SLURM defaults to running jobs in the directory where submitted;
#NOTE:Consider --workdir directive instead; and check functionality!
cd ${SLURM_SUBMIT_DIR}
cat > PSI.in << EOF
&CONTROL
calculation = "vc-relax",
pseudo_dir =
'/deac/phy/natalieGrp/natalie/wfurc9/EL7/QE/Downloadedpseudos'
verbosity = "high",
outdir = "$TMPDIR/",
prefix = 'PSI',
restart_mode = 'from_scratch',
nstep = 300,
dt = 20,
forc_conv_thr = 1.0D-5,
etot_conv_thr = 1.0D-6,
tstress = .true.,
tprnfor = .true.,
/
&SYSTEM
ibrav = 2,
celldm(1) = 10.6,
nat = 2,
ntyp = 2,
nosym =.FALSE.,
use_all_frac = .TRUE.,
ecutwfc = 81.d0,
/
&ELECTRONS
conv_thr = 1.D-7,
electron_maxstep = 200,
/
&IONS
/
&CELL
cell_dynamics='bfgs',
wmass = 1.00,
press = 0.0,
/
ATOMIC_SPECIES
Na 22.989769 Na_ONCV_PBEsol-1.0.upf
Cl 35.45 Cl.pbesol-n-rrkjus_psl.1.0.0.UPF
ATOMIC_POSITIONS {crystal}
Na 0.0 0.0 0.0
Cl 0.5 0.50 0.50
K_POINTS AUTOMATIC
8 8 8 0 0 0
EOF
mpirun $PW -in PSI.in > PSI.out
cat > PSI.phG.in << EOF
phonons
&inputph
outdir = '$TMPDIR',
prefix = 'PSI',
epsil = .true.,
ldisp = .true.,
fildyn = 'dyn.G',
tr2_ph = 1.0d-14,
start_q=1,
last_q=8,
nq1 = 4,
nq2 =4,
nq3 = 4,
/
EOF
mpirun $PH -in PSI.phG.in > PSI.phG.out
ls -Flag $TMPDIR
'rm' -r $TMPDIR
/usr/local/bin/slurm_mem_report -v
------------------------------------------------------------
N. A. W. Holzwarth email:
natalie at wfu.edu
Department of Physics web:
http://www.wfu.edu/~natalie
Wake Forest University phone:
1-336-758-5510
Winston-Salem, NC 27109 USA office: Rm. 300 Olin
Physical Lab
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