[Pw_forum] running OpenMPI pw.x error
K.M. Mohsin
mohsin.eee at gmail.com
Wed Apr 13 03:19:21 CEST 2016
Dear all,
I am trying to calculate SCF for graphene (2D bulk) using 16 processors. I
am having following errors. I am attaching Input and PBS file at the bottom
of email.
Thanks.
*Error : *
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD
with errorcode 1.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
*Inside output file: *
Program PWSCF v.5.1 starts on 9Apr2016 at 12:38:21
This program is part of the open-source Quantum ESPRESSO suite
for quantum simulation of materials; please cite
"P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009);
URL http://www.quantum-espresso.org",
in publications or presentations arising from this work. More details
at
http://www.quantum-espresso.org/quote
Parallel version (MPI), running on 16 processors
R & G space division: proc/nbgrp/npool/nimage = 16
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Error in routine read_input (2): opening input file
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
stopping ...
This error message is repeated 16 times from each processors.
*My input file:*
&CONTROL
calculation = 'scf'
restart_mode='from_scratch',
prefix='graphene',
pseudo_dir = '/home/kmohsi1/QE/',
outdir='./',
/
&SYSTEM
ibrav= 0, celldm(1) =4.7375, nat= 2, ntyp= 1,
ecutwfc =70.0, ecutrho=560.0, occupations='smearing',
nbnd = 8, degauss=0.1, exxdiv_treatment = 'gygi-baldereschi' ,
/
&ELECTRONS
diagonalization='david', electron_maxstep = 100,
mixing_mode = 'plain', mixing_beta = 0.7,
conv_thr = 1.0d-2,
/
CELL_PARAMETERS alat
1.000000000 0.000000000 0.000000000
0.500000000 0.866025400 0.000000000
0.000000000 0.000000000 12.000000000
ATOMIC_SPECIES
C 12.00000 C.pz-rrkjus.UPF
ATOMIC_POSITIONS alat
C 0.000000000 0.00000000 0.000000
C 0.000000000 0.5773503 0.000000
K_POINTS tpiba_b
4
0.0000000 0.0000000 0.000 10
1.0000000 0.0000000 0.000 10
1.0000000 0.5773503 0.000 10
0.0000000 0.0000000 0.000 10
*For job submission I used following PBS file, *
#!/bin/bash
#PBS -l nodes=1:ppn=16
#PBS -l walltime=00:05:00
#PBS -q workq
#PBS -A hpc_graphene01
BIN_DIR=$ESPRESSO_ROOT/bin
mpirun -np 16 $BIN_DIR/pw.x -i gr.in
I appreciate any help, suggestion or comments. If I am missing any
necessary postfix or prefix in PBS command, please remind me.
Thanks.
--
K. M. MOHSIN
PhD candidate
Dept. of Electrical and Computer Engineering,
Louisiana State University, Baton Rouge, LA. U.S.A.
Phone : +1 (832) 868 8371
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