[Pw_forum] transition state using NEB
Ravi Kiran
ravikirans.87 at gmail.com
Sun Feb 1 19:35:08 CET 2015
Dear Dr. Lorenzo,
I have tried all possible paths from octa-octa but still I get the same
value. The full input script I am using to calculate activation energy is
as follows .
BEGIN
BEGIN_PATH_INPUT
&PATH
string_method = 'neb',
restart_mode = 'restart',
nstep_path = 60,
ds = 2.D0,
opt_scheme = "broyden",
num_of_images = 7,
first_last_opt = .TRUE.,
minimum_image = .TRUE.,
k_max = 0.3D0,
k_min = 0.2D0,
path_thr = 0.01D0,
/
END_PATH_INPUT
BEGIN_ENGINE_INPUT
&control
calculation='relax',
prefix='NiHeN',
tprnfor =.t.,
pseudo_dir = '/home/ras256/nebH',
outdir='/home/ras256/nebH/tmp',
/
&SYSTEM
nat = 5,
ntyp = 2,
degauss = 0.018,
nbnd = 48,
nspin = 2,
starting_magnetization(1) = 0.0,
starting_magnetization(2) = 0.5,
ecutwfc = 45,
ibrav = 0,
occupations = 'smearing',
smearing = 'gauss',
ecutrho = 700,
/
&ELECTRONS
conv_thr = 1e-08,
mixing_beta = 0.7,
mixing_mode = 'local-TF',
/
&IONS
/
&CELL
/
ATOMIC_SPECIES
H 1.00 H.pbe-vbc.UPF
Ni 58.6934 Ni.pbe-nd-rrkjus.UPF
K_POINTS automatic
6 6 6 0 0 0
BEGIN_POSITIONS
FIRST_IMAGE
ATOMIC_POSITIONS crystal
Ni 0 0 0
Ni 0 0.5 0.5
Ni 0.5 0 0.5
Ni 0.5 0.5 0
H 0.5 0.5 0.5
LAST_IMAGE
ATOMIC_POSITIONS crystal
Ni 0 0 0
Ni 0 0.5 0.5
Ni 0.5 0 0.5
Ni 0.5 0.5 0
H 0.5 0.0 0.0
END_POSITIONS
CELL_PARAMETERS angstrom
3.522900 0.000000 0.000000
0.000000 3.522900 0.000000
0.000000 0.000000 3.522900
END_ENGINE_INPUT
END
> Hi,
>
> I am using neb to calculate activation energy of hydrogen in unit cell
> of nickel. I have placed hydrogen in octahedral position and I am
> moving it to another octahedral position as shown below. My question
> is whether neb can calculates transition state which is tetrahedral
> site?. I have used a path_thr of 0.01eV with 7 images. I have
> calculated the activation energy which I am getting is 1.05 eV as
> shown in output, whereas the experiments indicate 0.42.
> Are you sure that initial and final positions are first-neighbours?
> The NEB code should produce an axsf file that you can examine with
> xcrysden to check the path.
>If it is ok, there are innumerable other possible sources of error, most
of which we cannot guess from the very limited input/output you provide
--
Thanks
Ravi
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