[Pw_forum] Quantum Espresso Installation Error Message - Undefined reference.

[Lorenzo Paulatto]

On 10/28/2014 03:02 PM, HPC SUPPORT wrote:
> Dear All,
>
> While compiling Quantum Espresso version 5.1, we were getting undefined
> reference symbol problem like __intel_sse2_strcpy this symbol got resolved
> by adding the following library flags -L/app/l_ics_2012/lib/intel64/ -liompprof5
> -L/app/l_ics_2012/lib/intel64/ -liomp5.
> But after add it also we were still getting the same error message.
>
> so,Could you help us to solve this problem.
>
> # ./configure --prefix=/app/espresso-501 CFLAGS=$FCFLAGS
> BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core"
> SCALAPACK_LIBS="-lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64"
> FFT_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core"
> LIBS="-L/app/l_ics_2012/lib/intel64/ -liompprof5 -L/app/l_ics_2012/lib/intel64/
> -liomp5"

It looks to me like you're mixing intel and gnu compilers. Which 
compilers did you use to build mpi? Which implementation of mpi is it?


> mpif90 -g -pthread -o pw.x \
>             pwscf.o  libpw.a ../../Modules/libqemod.a ../../flib/ptools.a
> ../../flib/flib.a ../../clib/clib.a ../../iotk/src/libiotk.a
> -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lmkl_intel_lp64
> -lmkl_sequential -lmkl_core -lfftw3 -lmkl_intel_lp64 -lmkl_sequential
> -lmkl_core -lmkl_intel_lp64 -lmkl_sequential -lmkl_core
> ../../clib/clib.a(eval_infix.o): In function `GetNextToken':
> eval_infix.c:(.text+0x589): undefined reference to `__intel_sse2_strcpy'
> eval_infix.c:(.text+0x6c5): undefined reference to `__intel_sse2_strcpy'
> eval_infix.c:(.text+0x925): undefined reference to `__intel_sse2_strcpy'
> ../../clib/clib.a(eval_infix.o): In function `eval_infix':
> eval_infix.c:(.text+0xa25): undefined reference to `_intel_fast_memset'
> eval_infix.c:(.text+0xa4f): undefined reference to `_intel_fast_memcpy'
> eval_infix.c:(.text+0xa6e): undefined reference to `_intel_fast_memset'
> ../../clib/clib.a(eval_infix.o): In function `EvalInfix':
> eval_infix.c:(.text+0xece): undefined reference to `__intel_sse2_strcpy'
> eval_infix.c:(.text+0x1006): undefined reference to `__intel_sse2_strcpy'
> ../../clib/clib.a(md5_from_file.o): In function `readFile':
> md5_from_file.c:(.text+0x56): undefined reference to `_intel_fast_memset'
> ../../clib/clib.a(md5_from_file.o): In function `get_md5':
> md5_from_file.c:(.text+0x125): undefined reference to `_intel_fast_memset'
> md5_from_file.c:(.text+0x16c): undefined reference to `__intel_sse2_strlen'
> ../../clib/clib.a(md5.o): In function `md5_append':
> md5.c:(.text+0x80): undefined reference to `_intel_fast_memcpy'
> md5.c:(.text+0xf2): undefined reference to `_intel_fast_memcpy'
> ../../clib/clib.a(md5.o): In function `md5_finish':
> md5.c:(.text+0xe73): undefined reference to `_intel_fast_memcpy'
> md5.c:(.text+0xedd): undefined reference to `_intel_fast_memcpy'
> md5.c:(.text+0xf2f): undefined reference to `_intel_fast_memcpy'
> ../../clib/clib.a(md5.o):md5.c:(.text+0xf9a): more undefined references to
> `_intel_fast_memcpy' follow
> /app/intel/composer_xe_2013.1.117/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a(igesd2d_.o):
> In function `igesd2d_':
> ../../../../scalapack/BLACS/SRC/MPI/igesd2d_.c:(.text+0x49): undefined reference
> to `ompi_mpi_int'
> ../../../../scalapack/BLACS/SRC/MPI/igesd2d_.c:(.text+0x8b): undefined reference
> to `ompi_mpi_byte'
> /app/intel/composer_xe_2013.1.117/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a(sgesd2d_.o):
> In function `sgesd2d_':
> ../../../../scalapack/BLACS/SRC/MPI/sgesd2d_.c:(.text+0x49): undefined reference
> to `ompi_mpi_float'
>
> Thanks & Regards
> JaiKumar S
> HPC -Engineer,
> HCL Infosystems Ltd,
> PH : 09751855415
> Email:jaikumar.s at hcl.com  <https://webmail.hclinsys.com/src/compose.php?send_to=jaikumar.s%40hcl.com>
> Technology that touches lives
>
>
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-- 
Dr. Lorenzo Paulatto
IdR @ IMPMC -- CNRS & Université Paris 6
+33 (0)1 44 275 084 / skype: paulatz
http://www.impmc.upmc.fr/~paulatto/
23-24/4é16 Boîte courrier 115, 4 place Jussieu 75252 Paris Cédex 05

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