[Pw_forum] GPU14.03 compiling error

Mon Apr 7 20:49:39 CEST 2014

PS Sorry - pardon :

make -f Makefile.gpu pw-gpu LD_SHARED_FLAGS=-shared

-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-
   Ari Paavo Seitsonen / Ari.P.Seitsonen at iki.fi / http://www.iki.fi/~apsi/
   Institut für Chemie der Universität Zürich, CH-8057 Zürich
   Tel: +41 44 63 54 497  /  Mobile: +41 79 71 90 935

On Mon, 7 Apr 2014, PePe wrote:

> I also have a problem with the compilation. I downloaded espresso-5.0.99.tar.gz and QE-GPU-14.03.0.tar.gz, placed GPU directory in espresso main directory (did not apply any patches). Then,
> in GPU directory I run:
> ./configure --disable-parallel --enable-openmp --enable-cuda --with-gpu-arch=sm_35 --with-cuda-dir=$CUDA_HOME --with-magma --with-phigemm
> cd ..
> make -f Makefile.gpu pw-gpu
> 
> the error I get is as follows:
> 
> cc -O3 -fopenmp -fPIC -z muldefs  -o libphigemm.so.2.0 phigemm_auxiliary.o phigemm_env.o phigemm_dgemm.o phigemm_zgemm.o phigemm_dgemm_specialK.o phigemm_zgemm_specialK.o phigemm_cgemm.o
> phigemm_sgemm.o -L/usr/local/cuda-5.5/lib64 -lcublas  -lcufft -lcudart /home/pepe/src/espresso-5.0.99/GPU/..//phiGEMM/lib/libphigemm.a   -lblas  -L/usr/local/cuda-5.5/lib64 -lcublas  -lcufft
> -lcudart 
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 0 has invalid symbol index 11
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 1 has invalid symbol index 12
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 2 has invalid symbol index 2
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 3 has invalid symbol index 2
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 4 has invalid symbol index 11
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 5 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 6 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 7 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 8 has invalid symbol index 12
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 9 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 10 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 11 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 12 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 13 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 14 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 15 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 16 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 17 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 18 has invalid symbol index 13
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 19 has invalid symbol index 21
> /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_line): relocation 0 has invalid symbol index 2
> /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o: In function `_start':
> (.text+0x20): undefined reference to `main'
> collect2: ld returned 1 exit status
> make[3]: *** [shared] Error 1
> make[3]: Leaving directory `/home/pepe/src/espresso-5.0.99/phiGEMM/src'
> make[2]: *** [phigemm] Error 2
> make[2]: Leaving directory `/home/pepe/src/espresso-5.0.99/phiGEMM'
> make[1]: *** [libphiGEMM] Error 2
> make[1]: Leaving directory `/home/pepe/src/espresso-5.0.99/GPU/install'
> make: *** [libphiGEMM] Error 2
> 
> Can somebody please help me.
> 
> 
> 
> On Sun, Apr 6, 2014 at 1:39 AM, 薛诗川 <nudt.xueshichuan at gmail.com> wrote:
>       oh sorry .it seems that i got it , is it espresso-5.0.99.tar.gz?
>
>       2014-04-06 15:27 GMT+08:00, 薛诗川 <nudt.xueshichuan at gmail.com>:
>       > Thank u professor
>       > i'll test as soon as possible and tell u the results.
>       > but the latest version is 5.0.2,right?
>       > when will 5.1 be released?
>       >
>       > 2014-04-03 11:18 GMT+08:00, 薛诗川 <nudt.xueshichuan at gmail.com>:
>       >> dear all,
>       >> happy to see that GPU 14.03 has been released, so
>       >> i tried to compile it for calculation.
>       >> i just followed the instructions in the README file and added few
>       >> manual DFLAGS and make.
>       >> but during the process, it failed with such an error:
>       >> Fatal error: cannot open mudule file 'mp_bands.mod' for reading.
>       >> i cannot figure out its reasons.
>       >> need  your help
>       >> thanks.
>       >>
>       >
>
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> 
>