[Pw_forum] errors in *.err files

Goranka Bilalbegovic gbilalbegovic at gmail.com
Thu May 23 18:30:31 CEST 2013


Intel compilers at the cluster I am using recently have been replaced with
gfortran/gcc. I compiled  espresso-5.0.2 an did not notice anything unusual
at the configure and compilation steps. However, while running pw jobs (my
own and examples) I found that *.err  files (from sge scripts) are not
empty:

[0] 16 at [0x00000000022d4628], grouputil.c[75]
[0] 8 at [0x00000000022d4578], local_proc.c[91]
[0] 8 at [0x00000000022d44c8], local_proc.c[90]
[0] 32 at [0x00000000022d43f8], mpid_vc.c[93]
[0] 16 at [0x00000000022d4338], grouputil.c[75]
[0] 8 at [0x00000000022d4288], local_proc.c[91]
[0] 8 at [0x00000000022d41d8], local_proc.c[90]
[0] 32 at [0x00000000022d4108], mpid_vc.c[93]
[0] 16 at [0x00000000022d4048], grouputil.c[75]
[0] 8 at [0x00000000022d3f98], local_proc.c[91]
[0] 8 at [0x00000000022d3ee8], local_proc.c[90]
[0] 32 at [0x00000000022d3e18], mpid_vc.c[93]
[0] 16 at [0x00000000022d3d58], grouputil.c[75]
[0] 8 at [0x00000000022d3ca8], local_proc.c[91]
[0] 8 at [0x00000000022d3bf8], local_proc.c[90]
[0] 32 at [0x00000000022d3a78], mpid_vc.c[93]
... (more lines)

The compiler version is:

mpicc for MVAPICH2 version 1.8a2
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
--infodir=/usr/share/info
--with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap
--enable-shared
--enable-threads=posix --enable-checking=release --with-system-zlib
--enable-__cxa_atexit
--disable-libunwind-exceptions --enable-gnu-unique-object
--enable-languages=c,c++,objc,obj-c++,java,fortran,ada
--enable-java-awt=gtk
--disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre
--enable-libgcj-multifile --enable-java-maintainer-mode
--with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib
--with-ppl --with-cloog --with-tune=generic --with-arch_32=i686
--build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.6 20120305 (Red Hat 4.4.6-4) (GCC)


The results from examples are OK, but I would like to know why lines like
this appear. Is it dangerous ?
Thank you very much for your answer.
Best regards,
-- 
Goranka Bilalbegovic
Department of Physics, Faculty of Science,
University of Zagreb, Croatia
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