[QE-developers] Laue-RISM screening (qe-rism-6.5.0)
Kaňka Jiří
kanka at ufe.cz
Sat Apr 17 13:56:48 CEST 2021
Dear QE-ESM-RISM developers,
What are the relations between the room in an expand-cell available for solvent ions and the solution ionic strength?
Should it be always set in such way that there is a sufficient number of counterions for a full screening of the solute charge?
The first case below meets the requirement for neutrality: solute charge = - solvent charge, the second case does not meet the neutrality condition,
despite this the Laue-Rism calculation converged. If the calculation is still correct, it would enable me to investigate the screening of
charged carboxyl groups vs solvent ionic strength and the image of the unscreened charge on the electrode surface charge distribution.
Is it possible within the qe-esm-rism program to prevent the screening of the charged molecule which coerresponds to a real situation
when a solution with a low ionic-strength is used and in the solution there are only dissociated counter ions and the ions setting a required pH?
solute: Au(111)+ Alkanethiol (3MPA)SAM with deprotonated end carboxyl groups (COO-), 4 SAM molecules within a unit supercell (2*sqrt(3}x2*sqrt(3))R30
solute total charge -4
solvent: H2O+NaCl(aq)
1M Na+ 1M Cl-
End of Laue-RISM calculation
convergence has been achieved in 563 iterations
solvent charge 4.00115, renormalised to 4.00000
Total number of solvent (in expand-cell)
H2O 195.025857
Na+ 7.303247
Cl- 3.303196
Total charge of solvent (in expand-cell)
H2O 0.001091 e
Na+ 7.303247 e
Cl- -3.303196 e
Total 4.001141 e
Chemical potential of solvation (in expand-cell)
H2O GaussFluct -0.155709E+03 kcal/mol
Na+ GaussFluct 0.119601E+05 kcal/mol
Cl- GaussFluct -0.115505E+05 kcal/mol
Total GaussFluct 0.253883E+03 kcal/mol
0.1M Na+ 0.1M Cl-
End of Laue-RISM calculation
convergence has been achieved in 185 iterations
solvent charge 0.00030, renormalised to 0.00000
Total number of solvent (in expand-cell)
H2O 193.416542
Na+ 0.344344
Cl- 0.344147
Total charge of solvent (in expand-cell)
H2O 0.000101 e
Na+ 0.344344 e
Cl- -0.344147 e
Total 0.000297 e
Chemical potential of solvation (in expand-cell)
H2O GaussFluct 0.119841E+03 kcal/mol
Na+ GaussFluct -0.427886E+01 kcal/mol
Cl- GaussFluct 0.475620E+01 kcal/mol
Total GaussFluct 0.120318E+03 kcal/mol
Thank you.
Best regards,
Jiri Kanka
Optical Biosensors dpt.
Institute of Photonics and Electronics
Czech Academy of Sciences
Prague
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