[Q-e-developers] diagonalization with multithreads libs slow: comparison between Jade (cines) and Fermi (cineca)
Layla Martin-Samos
lmartinsamos at gmail.com
Mon Oct 1 13:17:04 CEST 2012
Dear all, I have made some test calculations on Fermi and Jade, for a 107
atoms system, 70 Ry cutoff for wfc, 285 occupied bands and 1 kpoint. What
the results seems to show is that the diagonalization with multithreads lib
seems to considerably slowdown the diagonalization time (diaghd is called
33 times on all the jobs and the final results are identical). The compiled
cineca version gives identical time and results than 5.0.1. Note that jade
in sequential is faster than BGQ. I am continuing some other tests on jade,
unfortunatelly the runs stay a lot of time in the queue, the machine is
full and even for a 10 min job with 32 cores you wait more than 3 hours. As
attachement I put the two make.sys for jade.
omputer mpi process threads ndiag complex/gamma_only time for
diaghg version Libs
bgq 128 4 1 complex (cdiaghg)
69.28 s 5.0.1 threads
bgq 128 4 1 complex
(cdiaghg) 69.14 s 4.3.2 threads
jade 32 1 1 complex
(cdiaghg) 27.44 s 4.3.2 sequential
jade 32 1 1 complex
(cdiaghg) > 10 min 4.3.2 threads
jade 32 1 1 complex
(cdiaghg) > 10 min 5.0.1 threads
bgq 128 4 4 complex
(cdiaghg) 310.52 s 5.0.1 threads
bgq 128 4 4 gamma
(rdiaghg) 73.87 s 5.0.1 threads
bgq 128 4 4 gamma
(rdiaghg) 73.71 s 4.3.2 threads
bgq 128 4 1 gamma (rdiaghg)
CRASH 2 it 5.0.1 threads
bgq 128 4 1 gamma
(rdiaghg) CRASH 2 it 4.3.2 threads
did someone observe a similar behavior?
cheers
Layla
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