[Wannier] Principle layers

Haichang Lu hl432 at cam.ac.uk
Tue May 16 17:17:37 CEST 2017


Dear All,
To make thing clear, attached is the atomic structure and wout file.
I want to use 2 unit cells of Graphene nanoribbon as left and right 
lead.

Thanks
              +---------------------------------------------------+
              |                                                   |
              |                   WANNIER90                       |
              |                                                   |
              +---------------------------------------------------+
              |                                                   |
              |        Welcome to the Maximally-Localized         |
              |        Generalized Wannier Functions code         |
              |            http://www.wannier.org                 |
              |                                                   |
              |  Wannier90 v2.x Authors:                          |
              |    Arash A. Mostofi  (Imperial College London)    |
              |    Giovanni Pizzi    (EPFL)                       |
              |    Ivo Souza         (Universidad del Pais Vasco) |
              |    Jonathan R. Yates (University of Oxford)       |
              |                                                   |
              |  Wannier90 Contributors:                          |
              |    Young-Su Lee       (KIST, S. Korea)            |
              |    Matthew Shelley    (Imperial College London)   |
              |    Nicolas Poilvert   (Penn State University)     |
              |    Raffaello Bianco   (Paris 6 and CNRS)          |
              |    Gabriele Sclauzero (ETH Zurich)                |
              |    David Strubbe (MIT, USA)                       |
              |    Rei Sakuma (Lund University, Sweden)           |
              |    Yusuke Nomura (U. Tokyo, Japan)                |
              |    Takashi Koretsune (Riken, Japan)               |
              |    Yoshiro Nohara (ASMS Co. Ltd., Japan)          |
              |    Ryotaro Arita (Riken, Japan)                   |
              |    Lorenzo Paulatto (UPMC Paris)                  |
              |    Florian Thole (ETH Zurich)                     |
              |    Pablo Garcia Fernandez (Unican, Spain)         |
              |    Dominik Gresch (ETH Zurich)                    |
              |    Samuel Ponce (University of Oxford)            |
              |    Marco Gibertini (EPFL)                         |
              |    Christian Stieger (ETHZ, CH)                   |
              |    Stepan Tsirkin (Universidad del Pais Vasco)    |
              |                                                   |
              |  Wannier77 Authors:                               |
              |    Nicola Marzari    (EPFL)                       |
              |    Ivo Souza         (Universidad del Pais Vasco) |
              |    David Vanderbilt  (Rutgers University)         |
              |                                                   |
              |  Please cite                                      |
              |                                                   |
              |  [ref] "An updated version of Wannier90:          |
              |        A Tool for Obtaining Maximally Localised   |
              |        Wannier Functions", A. A. Mostofi,         |
              |        J. R. Yates, G. Pizzi, Y. S. Lee,          |
              |        I. Souza, D. Vanderbilt and N. Marzari,    |
              |        Comput. Phys. Commun. 185, 2309 (2014)     |
              |        http://dx.doi.org/10.1016/j.cpc.2014.05.003|
              |                                                   |
              |  in any publications arising from the use of      |
              |  this code. For the method please cite            |
              |                                                   |
              |  [ref] "Maximally Localized Generalised Wannier   |
              |         Functions for Composite Energy Bands"     |
              |         N. Marzari and D. Vanderbilt              |
              |         Phys. Rev. B 56 12847 (1997)              |
              |                                                   |
              |  [ref] "Maximally Localized Wannier Functions     |
              |         for Entangled Energy Bands"               |
              |         I. Souza, N. Marzari and D. Vanderbilt    |
              |         Phys. Rev. B 65 035109 (2001)             |
              |                                                   |
              |                                                   |
              | Copyright (c) 1996-2017                           |
              |        Arash A. Mostofi, Jonathan R. Yates,       |
              |        Young-Su Lee, Giovanni Pizzi, Ivo Souza,   |
              |        David Vanderbilt and Nicola Marzari        |
              |                                                   |
              |        Release: 2.1.0   13th January 2017         |
              |                                                   |
              | This program is free software; you can            |
              | redistribute it and/or modify it under the terms  |
              | of the GNU General Public License as published by |
              | the Free Software Foundation; either version 2 of |
              | the License, or (at your option) any later version|
              |                                                   |
              | This program is distributed in the hope that it   |
              | will be useful, but WITHOUT ANY WARRANTY; without |
              | even the implied warranty of MERCHANTABILITY or   |
              | FITNESS FOR A PARTICULAR PURPOSE. See the GNU     |
              | General Public License for more details.          |
              |                                                   |
              | You should have received a copy of the GNU General|
              | Public License along with this program; if not,   |
              | write to the Free Software Foundation, Inc.,      |
              | 675 Mass Ave, Cambridge, MA 02139, USA.           |
              |                                                   |
              +---------------------------------------------------+
              |    Execution started on 16May2017 at 15:26:28     |
              +---------------------------------------------------+

  
******************************************************************************
  * -> Using CODATA 2006 constant values                                  
      *
  *    (http://physics.nist.gov/cuu/Constants/index.html)                 
      *
  * -> Using Bohr value from CODATA                                       
      *
  
******************************************************************************


                                     ------
                                     SYSTEM
                                     ------

                               Lattice Vectors (Ang)
                     a_1    28.620869   0.000000   0.000000
                     a_2     0.000000  20.000000   0.000000
                     a_3     0.000000   0.000000  37.350000

                    Unit Cell Volume:   21379.78918  (Ang^3)

                         Reciprocal-Space Vectors (Ang^-1)
                     b_1     0.219532   0.000000   0.000000
                     b_2     0.000000   0.314159   0.000000
                     b_3     0.000000   0.000000   0.168225

  
*----------------------------------------------------------------------------*
  |   Site       Fractional Coordinate          Cartesian Coordinate 
(Ang)     |
  
+----------------------------------------------------------------------------+
  | H    1   0.79169   0.50000   0.08333   |   22.65885  10.00000   
3.11251    |
  | H    2   0.79132   0.50000   0.01837   |   22.64814  10.00000   
0.68596    |
  | H    3   0.77914   0.50000   0.56453   |   22.29976  10.00000  
21.08512    |
  | H    4   0.78971   0.50000   0.30588   |   22.60226  10.00000  
11.42446    |
  | H    5   0.78295   0.50000   0.42341   |   22.40861  10.00000  
15.81437    |
  | H    6   0.77829   0.50000   0.24587   |   22.27522  10.00000   
9.18328    |
  | H    7   0.21301   0.50000   0.35883   |    6.09666  10.00000  
13.40233    |
  | H    8   0.21061   0.50000   0.19885   |    6.02794  10.00000   
7.42698    |
  | H    9   0.79092   0.50000   0.13474   |   22.63678  10.00000   
5.03262    |
  | H   10   0.79169   0.50000   0.85663   |   22.65885  10.00000  
31.99531    |
  | H   11   0.79132   0.50000   0.79167   |   22.64814  10.00000  
29.56876    |
  | H   12   0.78971   0.50000   0.62974   |   22.60226  10.00000  
23.52086    |
  | H   13   0.78295   0.50000   0.74728   |   22.40861  10.00000  
27.91077    |
  | H   14   0.21301   0.50000   0.68270   |    6.09666  10.00000  
25.49873    |
  | H   15   0.21061   0.50000   0.97215   |    6.02794  10.00000  
36.30978    |
  | H   16   0.79092   0.50000   0.90804   |   22.63678  10.00000  
33.91542    |
  | H   17  -0.79169  -0.50000   0.08333   |  -22.65885 -10.00000   
3.11251    |
  | H   18  -0.79132  -0.50000   0.01837   |  -22.64814 -10.00000   
0.68596    |
  | H   19  -0.77914  -0.50000   0.56453   |  -22.29976 -10.00000  
21.08512    |
  | H   20  -0.78971  -0.50000   0.30588   |  -22.60226 -10.00000  
11.42446    |
  | H   21  -0.78295  -0.50000   0.42341   |  -22.40861 -10.00000  
15.81437    |
  | H   22  -0.77829  -0.50000   0.24587   |  -22.27522 -10.00000   
9.18328    |
  | H   23  -0.21301  -0.50000   0.35883   |   -6.09666 -10.00000  
13.40233    |
  | H   24  -0.21061  -0.50000   0.19885   |   -6.02794 -10.00000   
7.42698    |
  | H   25  -0.79092  -0.50000   0.13474   |  -22.63678 -10.00000   
5.03262    |
  | H   26  -0.79169  -0.50000   0.85663   |  -22.65885 -10.00000  
31.99531    |
  | H   27  -0.79132  -0.50000   0.79167   |  -22.64814 -10.00000  
29.56876    |
  | H   28  -0.78971  -0.50000   0.62974   |  -22.60226 -10.00000  
23.52086    |
  | H   29  -0.78295  -0.50000   0.74728   |  -22.40861 -10.00000  
27.91077    |
  | H   30  -0.21301  -0.50000   0.68270   |   -6.09666 -10.00000  
25.49873    |
  | H   31  -0.21061  -0.50000   0.97215   |   -6.02794 -10.00000  
36.30978    |
  | H   32  -0.79092  -0.50000   0.90804   |  -22.63678 -10.00000  
33.91542    |
  | C    1   0.67292   0.50000   0.03221   |   19.25943  10.00000   
1.20289    |
  | C    2   0.58606   0.50000   0.03226   |   16.77364  10.00000   
1.20488    |
  | C    3   0.58620   0.50000   0.07012   |   16.77766  10.00000   
2.61909    |
  | C    4   0.67301   0.50000   0.07018   |   19.26216  10.00000   
2.62132    |
  | C    5   0.75828   0.50000   0.06941   |   21.70257  10.00000   
2.59257    |
  | C    6   0.54298   0.50000   0.01364   |   15.54054  10.00000   
0.50945    |
  | C    7   0.71592   0.50000   0.01329   |   20.49032  10.00000   
0.49622    |
  | C    8   0.75807   0.50000   0.03259   |   21.69663  10.00000   
1.21718    |
  | C    9   0.54305   0.50000   0.08864   |   15.54261  10.00000   
3.31074    |
  | C   10   0.71618   0.50000   0.08902   |   20.49759  10.00000   
3.32503    |
  | C   11   0.62935   0.50000   0.08879   |   18.01258  10.00000   
3.31618    |
  | C   12   0.37075   0.50000   0.01387   |   10.61117  10.00000   
0.51801    |
  | C   13   0.71006   0.50000   0.56310   |   20.32247  10.00000  
21.03178    |
  | C   14   0.62545   0.50000   0.45910   |   17.90092  10.00000  
17.14731    |
  | C   15   0.54278   0.50000   0.56401   |   15.53477  10.00000  
21.06584    |
  | C   16   0.62683   0.50000   0.56648   |   17.94031  10.00000  
21.15785    |
  | C   17   0.66931   0.50000   0.51047   |   19.15617  10.00000  
19.06609    |
  | C   18   0.58387   0.50000   0.51099   |   16.71097  10.00000  
19.08565    |
  | C   19   0.67208   0.50000   0.14534   |   19.23565  10.00000   
5.42861    |
  | C   20   0.54237   0.50000   0.20165   |   15.52310  10.00000   
7.53152    |
  | C   21   0.58571   0.50000   0.14490   |   16.76347  10.00000   
5.41205    |
  | C   22   0.71259   0.50000   0.20313   |   20.39482  10.00000   
7.58704    |
  | C   23   0.58060   0.50000   0.40196   |   16.61729  10.00000  
15.01313    |
  | C   24   0.70665   0.50000   0.24119   |   20.22491  10.00000   
9.00858    |
  | C   25   0.62899   0.50000   0.12642   |   18.00211  10.00000   
4.72193    |
  | C   26   0.75283   0.50000   0.29679   |   21.54657  10.00000  
11.08514    |
  | C   27   0.67018   0.50000   0.40281   |   19.18106  10.00000  
15.04500    |
  | C   28   0.54427   0.50000   0.23964   |   15.57742  10.00000   
8.95054    |
  | C   29   0.75066   0.50000   0.40757   |   21.48465  10.00000  
15.22274    |
  | C   30   0.62592   0.50000   0.23874   |   17.91444  10.00000   
8.91711    |
  | C   31   0.54242   0.50000   0.34849   |   15.52441  10.00000  
13.01618    |
  | C   32   0.67090   0.50000   0.18307   |   19.20178  10.00000   
6.83783    |
  | C   33   0.71330   0.50000   0.35121   |   20.41521  10.00000  
13.11778    |
  | C   34   0.58502   0.50000   0.18265   |   16.74388  10.00000   
6.82212    |
  | C   35   0.62746   0.50000   0.20116   |   17.95851  10.00000   
7.51328    |
  | C   36   0.45706   0.50000   0.12632   |   13.08134  10.00000   
4.71795    |
  | C   37   0.71565   0.50000   0.12738   |   20.48250  10.00000   
4.75782    |
  | C   38   0.75706   0.50000   0.14805   |   21.66773  10.00000   
5.52961    |
  | C   39   0.75585   0.50000   0.18484   |   21.63300  10.00000   
6.90394    |
  | C   40   0.67292   0.50000   0.80551   |   19.25943  10.00000  
30.08568    |
  | C   41   0.58606   0.50000   0.80556   |   16.77364  10.00000  
30.08768    |
  | C   42   0.58620   0.50000   0.84342   |   16.77766  10.00000  
31.50189    |
  | C   43   0.67301   0.50000   0.84348   |   19.26216  10.00000  
31.50412    |
  | C   44   0.75828   0.50000   0.84271   |   21.70257  10.00000  
31.47537    |
  | C   45   0.54298   0.50000   0.78694   |   15.54054  10.00000  
29.39225    |
  | C   46   0.71592   0.50000   0.78659   |   20.49032  10.00000  
29.37902    |
  | C   47   0.75807   0.50000   0.80589   |   21.69663  10.00000  
30.09998    |
  | C   48   0.54305   0.50000   0.86194   |   15.54261  10.00000  
32.19354    |
  | C   49   0.71618   0.50000   0.86232   |   20.49759  10.00000  
32.20783    |
  | C   50   0.58060   0.50000   0.72582   |   16.61729  10.00000  
27.10953    |
  | C   51   0.75283   0.50000   0.62066   |   21.54657  10.00000  
23.18154    |
  | C   52   0.67018   0.50000   0.72668   |   19.18106  10.00000  
27.14140    |
  | C   53   0.75066   0.50000   0.73144   |   21.48465  10.00000  
27.31914    |
  | C   54   0.54242   0.50000   0.67236   |   15.52441  10.00000  
25.11258    |
  | C   55   0.71330   0.50000   0.67508   |   20.41521  10.00000  
25.21418    |
  | C   56   0.62935   0.50000   0.86209   |   18.01258  10.00000  
32.19898    |
  | C   57   0.37075   0.50000   0.78717   |   10.61117  10.00000  
29.40081    |
  | C   58   0.67208   0.50000   0.91865   |   19.23565  10.00000  
34.31141    |
  | C   59   0.54412   0.50000   0.97495   |   15.57310  10.00000  
36.41432    |
  | C   60   0.58571   0.50000   0.91820   |   16.76347  10.00000  
34.29485    |
  | C   61   0.71608   0.50000   0.97643   |   20.49482  10.00000  
36.46984    |
  | C   62   0.62899   0.50000   0.89973   |   18.00211  10.00000  
33.60473    |
  | C   63   0.67090   0.50000   0.95638   |   19.20178  10.00000  
35.72063    |
  | C   64   0.58502   0.50000   0.95596   |   16.74388  10.00000  
35.70492    |
  | C   65   0.63096   0.50000   0.97446   |   18.05851  10.00000  
36.39608    |
  | C   66   0.45706   0.50000   0.89962   |   13.08134  10.00000  
33.60075    |
  | C   67   0.71565   0.50000   0.90069   |   20.48250  10.00000  
33.64062    |
  | C   68   0.75706   0.50000   0.92135   |   21.66773  10.00000  
34.41241    |
  | C   69   0.75759   0.50000   0.95815   |   21.68300  10.00000  
35.78673    |
  | C   70  -0.67292  -0.50000   0.03221   |  -19.25943 -10.00000   
1.20289    |
  | C   71  -0.58606  -0.50000   0.03226   |  -16.77364 -10.00000   
1.20488    |
  | C   72  -0.58620  -0.50000   0.07012   |  -16.77766 -10.00000   
2.61909    |
  | C   73  -0.67301  -0.50000   0.07018   |  -19.26216 -10.00000   
2.62132    |
  | C   74  -0.75828  -0.50000   0.06941   |  -21.70257 -10.00000   
2.59257    |
  | C   75  -0.54298  -0.50000   0.01364   |  -15.54054 -10.00000   
0.50945    |
  | C   76  -0.71592  -0.50000   0.01329   |  -20.49032 -10.00000   
0.49622    |
  | C   77  -0.75807  -0.50000   0.03259   |  -21.69663 -10.00000   
1.21718    |
  | C   78  -0.54305  -0.50000   0.08864   |  -15.54261 -10.00000   
3.31074    |
  | C   79  -0.71618  -0.50000   0.08902   |  -20.49759 -10.00000   
3.32503    |
  | C   80  -0.62935  -0.50000   0.08879   |  -18.01258 -10.00000   
3.31618    |
  | C   81  -0.37075  -0.50000   0.01387   |  -10.61117 -10.00000   
0.51801    |
  | C   82  -0.71006  -0.50000   0.56310   |  -20.32247 -10.00000  
21.03178    |
  | C   83  -0.62545  -0.50000   0.45910   |  -17.90092 -10.00000  
17.14731    |
  | C   84  -0.54278  -0.50000   0.56401   |  -15.53477 -10.00000  
21.06584    |
  | C   85  -0.62683  -0.50000   0.56648   |  -17.94031 -10.00000  
21.15785    |
  | C   86  -0.66931  -0.50000   0.51047   |  -19.15617 -10.00000  
19.06609    |
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19.08565    |
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5.42861    |
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7.53152    |
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5.41205    |
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7.58704    |
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15.01313    |
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9.00858    |
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4.72193    |
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11.08514    |
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15.04500    |
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8.95054    |
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15.22274    |
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8.91711    |
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13.01618    |
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6.83783    |
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13.11778    |
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6.82212    |
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7.51328    |
  | C  105  -0.45706  -0.50000   0.12632   |  -13.08134 -10.00000   
4.71795    |
  | C  106  -0.71565  -0.50000   0.12738   |  -20.48250 -10.00000   
4.75782    |
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5.52961    |
  | C  108  -0.75585  -0.50000   0.18484   |  -21.63300 -10.00000   
6.90394    |
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30.08568    |
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30.08768    |
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31.50189    |
  | C  112  -0.67301  -0.50000   0.84348   |  -19.26216 -10.00000  
31.50412    |
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31.47537    |
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29.39225    |
  | C  115  -0.71592  -0.50000   0.78659   |  -20.49032 -10.00000  
29.37902    |
  | C  116  -0.75807  -0.50000   0.80589   |  -21.69663 -10.00000  
30.09998    |
  | C  117  -0.54305  -0.50000   0.86194   |  -15.54261 -10.00000  
32.19354    |
  | C  118  -0.71618  -0.50000   0.86232   |  -20.49759 -10.00000  
32.20783    |
  | C  119  -0.58060  -0.50000   0.72582   |  -16.61729 -10.00000  
27.10953    |
  | C  120  -0.75283  -0.50000   0.62066   |  -21.54657 -10.00000  
23.18154    |
  | C  121  -0.67018  -0.50000   0.72668   |  -19.18106 -10.00000  
27.14140    |
  | C  122  -0.75066  -0.50000   0.73144   |  -21.48465 -10.00000  
27.31914    |
  | C  123  -0.54242  -0.50000   0.67236   |  -15.52441 -10.00000  
25.11258    |
  | C  124  -0.71330  -0.50000   0.67508   |  -20.41521 -10.00000  
25.21418    |
  | C  125  -0.62935  -0.50000   0.86209   |  -18.01258 -10.00000  
32.19898    |
  | C  126  -0.37075  -0.50000   0.78717   |  -10.61117 -10.00000  
29.40081    |
  | C  127  -0.67208  -0.50000   0.91865   |  -19.23565 -10.00000  
34.31141    |
  | C  128  -0.54412  -0.50000   0.97495   |  -15.57310 -10.00000  
36.41432    |
  | C  129  -0.58571  -0.50000   0.91820   |  -16.76347 -10.00000  
34.29485    |
  | C  130  -0.71608  -0.50000   0.97643   |  -20.49482 -10.00000  
36.46984    |
  | C  131  -0.62899  -0.50000   0.89973   |  -18.00211 -10.00000  
33.60473    |
  | C  132  -0.67090  -0.50000   0.95638   |  -19.20178 -10.00000  
35.72063    |
  | C  133  -0.58502  -0.50000   0.95596   |  -16.74388 -10.00000  
35.70492    |
  | C  134  -0.63096  -0.50000   0.97446   |  -18.05851 -10.00000  
36.39608    |
  | C  135  -0.45706  -0.50000   0.89962   |  -13.08134 -10.00000  
33.60075    |
  | C  136  -0.71565  -0.50000   0.90069   |  -20.48250 -10.00000  
33.64062    |
  | C  137  -0.75706  -0.50000   0.92135   |  -21.66773 -10.00000  
34.41241    |
  | C  138  -0.75759  -0.50000   0.95815   |  -21.68300 -10.00000  
35.78673    |
  | C  139   0.50000   0.50000   0.06999   |   14.31043  10.00000   
2.61423    |
  | C  140   0.50000   0.50000   0.03225   |   14.31043  10.00000   
1.20458    |
  | C  141   0.50000   0.50000   0.29695   |   14.31043  10.00000  
11.09112    |
  | C  142   0.50000   0.50000   0.40432   |   14.31043  10.00000  
15.10131    |
  | C  143   0.50000   0.50000   0.14513   |   14.31043  10.00000   
5.42079    |
  | C  144   0.50000   0.50000   0.18271   |   14.31043  10.00000   
6.82435    |
  | C  145   0.50000   0.50000   0.84329   |   14.31043  10.00000  
31.49703    |
  | C  146   0.50000   0.50000   0.80555   |   14.31043  10.00000  
30.08738    |
  | C  147   0.50000   0.50000   0.62082   |   14.31043  10.00000  
23.18752    |
  | C  148   0.50000   0.50000   0.72819   |   14.31043  10.00000  
27.19771    |
  | C  149   0.50000   0.50000   0.91844   |   14.31043  10.00000  
34.30359    |
  | C  150   0.50000   0.50000   0.95601   |   14.31043  10.00000  
35.70715    |
  | N    1   0.54108   0.50000   0.42131   |   15.48626  10.00000  
15.73584    |
  | N    2   0.66850   0.50000   0.58372   |   19.13305  10.00000  
21.80198    |
  | N    3   0.66694   0.50000   0.47591   |   19.08847  10.00000  
17.77511    |
  | N    4   0.54393   0.50000   0.52897   |   15.56762  10.00000  
19.75685    |
  | N    5   0.58457   0.50000   0.47606   |   16.73087  10.00000  
17.78066    |
  | N    6   0.71058   0.50000   0.52764   |   20.33731  10.00000  
19.70737    |
  | N    7   0.71052   0.50000   0.42322   |   20.33577  10.00000  
15.80722    |
  | N    8   0.58476   0.50000   0.58429   |   16.73633  10.00000  
21.82330    |
  | N    9   0.62690   0.50000   0.53025   |   17.94238  10.00000  
19.80502    |
  | N   10   0.62584   0.50000   0.42102   |   17.91213  10.00000  
15.72520    |
  | N   11   0.75062   0.50000   0.58107   |   21.48328  10.00000  
21.70308    |
  | N   12   0.66595   0.50000   0.25818   |   19.05998  10.00000   
9.64312    |
  | N   13   0.54166   0.50000   0.31320   |   15.50279  10.00000  
11.69808    |
  | N   14   0.67191   0.50000   0.36731   |   19.23059  10.00000  
13.71894    |
  | N   15   0.71498   0.50000   0.31596   |   20.46321  10.00000  
11.80107    |
  | N   16   0.58300   0.50000   0.36640   |   16.68585  10.00000  
13.68520    |
  | N   17   0.58465   0.50000   0.25673   |   16.73321  10.00000   
9.58884    |
  | N   18   0.75521   0.50000   0.37131   |   21.61487  10.00000  
13.86829    |
  | N   19   0.74826   0.50000   0.26058   |   21.41591  10.00000   
9.73268    |
  | N   20   0.54108   0.50000   0.74517   |   15.48626  10.00000  
27.83224    |
  | N   21   0.71052   0.50000   0.74708   |   20.33577  10.00000  
27.90362    |
  | N   22   0.62584   0.50000   0.74489   |   17.91213  10.00000  
27.82160    |
  | N   23   0.54166   0.50000   0.63707   |   15.50279  10.00000  
23.79448    |
  | N   24   0.67191   0.50000   0.69117   |   19.23059  10.00000  
25.81534    |
  | N   25   0.71498   0.50000   0.63983   |   20.46321  10.00000  
23.89747    |
  | N   26   0.58300   0.50000   0.69027   |   16.68585  10.00000  
25.78160    |
  | N   27   0.75521   0.50000   0.69517   |   21.61487  10.00000  
25.96469    |
  | N   28  -0.54108  -0.50000   0.42131   |  -15.48626 -10.00000  
15.73584    |
  | N   29  -0.66850  -0.50000   0.58372   |  -19.13305 -10.00000  
21.80198    |
  | N   30  -0.66694  -0.50000   0.47591   |  -19.08847 -10.00000  
17.77511    |
  | N   31  -0.54393  -0.50000   0.52897   |  -15.56762 -10.00000  
19.75685    |
  | N   32  -0.58457  -0.50000   0.47606   |  -16.73087 -10.00000  
17.78066    |
  | N   33  -0.71058  -0.50000   0.52764   |  -20.33731 -10.00000  
19.70737    |
  | N   34  -0.71052  -0.50000   0.42322   |  -20.33577 -10.00000  
15.80722    |
  | N   35  -0.58476  -0.50000   0.58429   |  -16.73633 -10.00000  
21.82330    |
  | N   36  -0.62690  -0.50000   0.53025   |  -17.94238 -10.00000  
19.80502    |
  | N   37  -0.62584  -0.50000   0.42102   |  -17.91213 -10.00000  
15.72520    |
  | N   38  -0.75062  -0.50000   0.58107   |  -21.48328 -10.00000  
21.70308    |
  | N   39  -0.66595  -0.50000   0.25818   |  -19.05998 -10.00000   
9.64312    |
  | N   40  -0.54166  -0.50000   0.31320   |  -15.50279 -10.00000  
11.69808    |
  | N   41  -0.67191  -0.50000   0.36731   |  -19.23059 -10.00000  
13.71894    |
  | N   42  -0.71498  -0.50000   0.31596   |  -20.46321 -10.00000  
11.80107    |
  | N   43  -0.58300  -0.50000   0.36640   |  -16.68585 -10.00000  
13.68520    |
  | N   44  -0.58465  -0.50000   0.25673   |  -16.73321 -10.00000   
9.58884    |
  | N   45  -0.75521  -0.50000   0.37131   |  -21.61487 -10.00000  
13.86829    |
  | N   46  -0.74826  -0.50000   0.26058   |  -21.41591 -10.00000   
9.73268    |
  | N   47  -0.54108  -0.50000   0.74517   |  -15.48626 -10.00000  
27.83224    |
  | N   48  -0.71052  -0.50000   0.74708   |  -20.33577 -10.00000  
27.90362    |
  | N   49  -0.62584  -0.50000   0.74489   |  -17.91213 -10.00000  
27.82160    |
  | N   50  -0.54166  -0.50000   0.63707   |  -15.50279 -10.00000  
23.79448    |
  | N   51  -0.67191  -0.50000   0.69117   |  -19.23059 -10.00000  
25.81534    |
  | N   52  -0.71498  -0.50000   0.63983   |  -20.46321 -10.00000  
23.89747    |
  | N   53  -0.58300  -0.50000   0.69027   |  -16.68585 -10.00000  
25.78160    |
  | N   54  -0.75521  -0.50000   0.69517   |  -21.61487 -10.00000  
25.96469    |
  | N   55   0.50000   0.50000   0.58236   |   14.31043  10.00000  
21.75109    |
  | N   56   0.50000   0.50000   0.36717   |   14.31043  10.00000  
13.71394    |
  | N   57   0.50000   0.50000   0.25915   |   14.31043  10.00000   
9.67918    |
  | N   58   0.50000   0.50000   0.69104   |   14.31043  10.00000  
25.81034    |
  
*----------------------------------------------------------------------------*

                                 ------------
                                 K-POINT GRID
                                 ------------

              Grid size =  1 x  1 x  1      Total points =    1


  *---------------------------------- MAIN 
------------------------------------*
  |  Number of Wannier Functions               :               461        
      |
  |  Number of input Bloch states              :               554        
      |
  |  Output verbosity (1=low, 5=high)          :                 1        
      |
  |  Timing Level (1=low, 5=high)              :                 1        
      |
  |  Optimisation (0=memory, 3=speed)          :                 3        
      |
  |  Length Unit                               :               Ang        
      |
  |  Post-processing setup (write *.nnkp)      :                 F        
      |
  |  Using Gamma-only branch of algorithms     :                 T        
      |
  
*----------------------------------------------------------------------------*
  *------------------------------- WANNIERISE 
---------------------------------*
  |  Total number of iterations                :               100        
      |
  |  Number of CG steps before reset           :                 5        
      |
  |  Trial step length for line search         :             2.000        
      |
  |  Convergence tolerence                     :         0.100E-06        
      |
  |  Convergence window                        :                20        
      |
  |  Iterations between writing output         :                 1        
      |
  |  Iterations between backing up to disk     :               100        
      |
  |  Write r^2_nm to file                      :                 F        
      |
  |  Write xyz WF centres to file              :                 F        
      |
  |  Write on-site energies <0n|H|0n> to file  :                 F        
      |
  |  Use guiding centre to control phases      :                 F        
      |
  |  Use phases for initial projections        :                 F        
      |
  
*----------------------------------------------------------------------------*
  *------------------------------- DISENTANGLE 
--------------------------------*
  |  Using band disentanglement                :                 T        
      |
  |  Total number of iterations                :               200        
      |
  |  Mixing ratio                              :             0.500        
      |
  |  Convergence tolerence                     :         1.000E-10        
      |
  |  Convergence window                        :                 3        
      |
  
*----------------------------------------------------------------------------*
  *------------------------------- TRANSPORT 
----------------------------------*
  |  Transport mode                            :               lcr        
      |
  |   Hamiltonian from external files          :                 F        
      |
  |   System extended in                       :                 z        
      |
  |   Centre of the unit cell to which WF are translated (fract. coords): 
      |
  |                                       0.500000,    0.500000,    
0.500000   |
  |  Fermi energy (eV)                         :             0.000        
      |
  
*----------------------------------------------------------------------------*
  Time to read parameters        0.016 (sec)

  *---------------------------------- K-MESH 
----------------------------------*
  
+----------------------------------------------------------------------------+
  |                    Distance to Nearest-Neighbour Shells               
      |
  |                    ------------------------------------               
      |
  |          Shell             Distance (Ang^-1)          Multiplicity    
      |
  |          -----             -----------------          ------------    
      |
  |             1                   0.168225                      2       
      |
  |             2                   0.219532                      2       
      |
  |             3                   0.276575                      4       
      |
  |             4                   0.314159                      2       
      |
  |             5                   0.336449                      2       
      |
  |             6                   0.356364                      4       
      |
  |             7                   0.383263                      4       
      |
  |             8                   0.401736                      4       
      |
  |             9                   0.418557                      8       
      |
  |            10                   0.439063                      2       
      |
  |            11                   0.460319                      4       
      |
  |            12                   0.470187                      4       
      |
  
+----------------------------------------------------------------------------+
  | The b-vectors are chosen automatically                                
      |
  | SVD found small singular value, Rejecting this shell and trying the 
next   |
  | The following shells are used:   1,  2,  4                            
      |
  
+----------------------------------------------------------------------------+
  |                        Shell   # Nearest-Neighbours                   
      |
  |                        -----   --------------------                   
      |
  |                          1               2                            
      |
  |                          2               2                            
      |
  |                          4               2                            
      |
  
+----------------------------------------------------------------------------+
  | Completeness relation is fully satisfied [Eq. (B1), PRB 56, 12847 
(1997)]  |
  
+----------------------------------------------------------------------------+
  |                  b_k Vectors (Ang^-1) and Weights (Ang^2)             
      |
  |                  ----------------------------------------             
      |
  |            No.         b_k(x)      b_k(y)      b_k(z)        w_b      
      |
  |            ---        --------------------------------     --------   
      |
  |             1         0.000000    0.000000    0.168225    17.668166   
      |
  |             2         0.000000    0.000000   -0.168225    17.668166   
      |
  |             3         0.219532    0.000000    0.000000    10.374709   
      |
  |             4        -0.219532    0.000000    0.000000    10.374709   
      |
  |             5         0.000000    0.314159    0.000000     5.066059   
      |
  |             6         0.000000   -0.314159    0.000000     5.066059   
      |
  
+----------------------------------------------------------------------------+
  |                           b_k Directions (Ang^-1)                     
      |
  |                           -----------------------                     
      |
  |            No.           x           y           z                    
      |
  |            ---        --------------------------------                
      |
  |             1         0.000000    0.000000    0.168225                
      |
  |             2         0.219532    0.000000    0.000000                
      |
  |             3         0.000000    0.314159    0.000000                
      |
  
+----------------------------------------------------------------------------+

  
+----------------------------------------------------------------------------+
  |        Gamma-point: number of the b-vectors is reduced by half        
      |
  
+----------------------------------------------------------------------------+
  |                  b_k Vectors (Ang^-1) and Weights (Ang^2)             
      |
  |                  ----------------------------------------             
      |
  |            No.         b_k(x)      b_k(y)      b_k(z)        w_b      
      |
  |            ---        --------------------------------     --------   
      |
  |             1         0.000000    0.000000    0.168225    35.336333   
      |
  |             2         0.219532    0.000000    0.000000    20.749417   
      |
  |             3         0.000000    0.314159    0.000000    10.132118   
      |
  
+----------------------------------------------------------------------------+

  
*============================================================================*
  |                              MEMORY ESTIMATE                          
      |
  |         Maximum RAM allocated during each phase of the calculation    
      |
  
*============================================================================*
  |                        Disentanglement           49.15 Mb             
      |
  |                            Wannierise:           65.82 Mb             
      |
  |                          plot_wannier:           65.82 Mb             
      |
  
*----------------------------------------------------------------------------*

  Reading restart information from file Gr_CNAC_Gr.chk :
  written on 16May2017 at 14:50:55 ... done

  Restarting Wannier90 from transport routines ...


  
*---------------------------------------------------------------------------*
  |                              TRANSPORT                                
     |
  
*---------------------------------------------------------------------------*


  Calculation of Quantum Conductance and DoS: lead-conductor-lead mode

  Translated centres
     translation centre in fractional coordinate:  0.500000  0.500000  
0.500000
   WF centre     1  ( 13.044159,  9.996161, 25.132759 )
   WF centre     2  (  8.743826, 10.003360, 28.073156 )
   WF centre     3  (  8.333963, 10.270369, 20.169384 )
   WF centre     4  ( 11.999645, 10.276792, 14.194827 )
   WF centre     5  ( 13.160077,  9.999809, 16.027225 )
   WF centre     6  ( 16.701959, 10.353912,  6.387238 )
   WF centre     7  ( 22.230613, 10.000041, 11.315282 )
   WF centre     8  ( 10.689458, 10.000454, 19.811732 )
   WF centre     9  ( 21.161025,  9.685993,  5.212481 )
   WF centre    10  ( 16.183001,  9.728870,  9.194902 )
   WF centre    11  ( 13.011548, 10.289544, 20.331230 )
   WF centre    12  ( 17.492875,  9.828687,  8.740867 )
   WF centre    13  (  8.117872, 10.004954, 36.201551 )
   WF centre    14  (  4.754591, 10.001256, 28.958016 )
   WF centre    15  (  8.300932, 10.000764, 27.908382 )
   WF centre    16  ( 19.232962,  9.723499, 14.419729 )
   WF centre    17  (  5.103745, 10.001768,  9.211211 )
   WF centre    18  ( 10.869972, 10.326274,  0.755226 )
   WF centre    19  ( 20.287482,  9.728888, 20.167557 )
   WF centre    20  (  9.504259, 10.000299, 22.113954 )
   WF centre    21  (  7.438987, 10.310449, 29.784800 )
   WF centre    22  ( 21.315179, 10.257677, 25.759476 )
   WF centre    23  (  7.799388,  9.999863, 27.620101 )
   WF centre    24  ( 19.883124,  9.981667, 28.062382 )
   WF centre    25  ( 15.007745,  9.720130,  2.925082 )
   WF centre    26  ( 16.258741, 10.332552, 36.362779 )
   WF centre    27  (  6.332595, 10.023308,  5.187343 )
   WF centre    28  ( 20.179684,  9.976763, 32.563756 )
   WF centre    29  (  4.351359, 10.010020, 34.994789 )
   WF centre    30  (  9.354838, 10.000310, 26.420040 )
   WF centre    31  ( 13.804678, 10.001821, 25.535104 )
   WF centre    32  ( 15.340488, 10.000562, 19.570543 )
   WF centre    33  ( 18.065806, 10.261619, 31.810611 )
   WF centre    34  (  9.644009, 10.303672, 31.637805 )
   WF centre    35  (  6.932352,  9.954763,  1.908123 )
   WF centre    36  (  7.462039,  9.718704,  5.240420 )
   WF centre    37  ( 18.583207,  9.718130, 17.543841 )
   WF centre    38  ( 19.818814, 10.086245, 31.914946 )
   WF centre    39  (  6.390257,  9.999082, 11.315300 )
   WF centre    40  ( 14.310813,  9.979859, 10.274763 )
   WF centre    41  ( 22.300473,  9.999499, 29.752058 )
   WF centre    42  ( 19.048519, 10.002380,  9.953985 )
   WF centre    43  ( 22.059706,  9.999452, 27.705151 )
   WF centre    44  (  7.065841, 10.000142, 26.557417 )
   WF centre    45  (  7.168390, 10.003296, 15.134534 )
   WF centre    46  ( 13.585614,  9.723938, 11.505376 )
   WF centre    47  ( 17.951722, 10.220556,  8.154149 )
   WF centre    48  ( 11.833401,  9.999345, 18.360541 )
   WF centre    49  ( 17.794916, 10.042761, 29.695817 )
   WF centre    50  (  7.305419, 10.257754, 25.759552 )
   WF centre    51  ( 18.598306,  9.991426, 29.748002 )
   WF centre    52  ( 23.301358, 14.090403, 13.251279 )
   WF centre    53  (  9.695258, 10.339612,  6.663192 )
   WF centre    54  ( 19.403643, 10.255100,  9.367440 )
   WF centre    55  (  6.733629, 10.000406,  9.441715 )
   WF centre    56  ( 12.891872, 10.071612,  4.874154 )
   WF centre    57  ( 20.221874,  9.691810,  7.934049 )
   WF centre    58  (  8.845414, 10.307968,  3.118257 )
   WF centre    59  (  8.948274,  9.686763, 29.804014 )
   WF centre    60  ( 20.312992, 10.242357,  8.181184 )
   WF centre    61  (  7.109180,  9.997447, 23.320186 )
   WF centre    62  ( 12.906028,  9.749214, 33.607411 )
   WF centre    63  ( 21.498026, 10.012565, 22.315250 )
   WF centre    64  ( 16.614480,  9.719230, 26.332122 )
   WF centre    65  (  6.524626,  9.999187, 15.599530 )
   WF centre    66  (  9.320261,  9.637853,  1.384593 )
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   WF centre   372  ( 20.472802, 10.278489, 24.375308 )
   WF centre   373  ( 13.293342, 10.004757, 19.580535 )
   WF centre   374  (  8.961097,  9.720848, 25.627357 )
   WF centre   375  ( 10.024433, 10.282391, 17.557399 )
   WF centre   376  ( 17.805675,  9.910293, 27.779155 )
   WF centre   377  (  6.956654, 10.011186, 35.091587 )
   WF centre   378  ( 16.431559,  9.910738, 29.647819 )
   WF centre   379  ( 20.495617,  9.991288,  4.041025 )
   WF centre   380  ( 11.188306,  9.998827, 19.505909 )
   WF centre   381  (  8.618495,  9.740379, 15.528066 )
   WF centre   382  (  8.333565,  9.729121, 20.168757 )
   WF centre   383  ( 20.001908,  9.740403, 15.527889 )
   WF centre   384  ( 16.622093,  9.724109, 14.191852 )
   WF centre   385  ( 13.121608,  9.996180, 28.443578 )
   WF centre   386  (  6.983179, 10.024701,  6.217861 )
   WF centre   387  (  7.644420, 10.044548, 21.426780 )
   WF centre   388  ( 14.816186, 10.001344, 25.535087 )
   WF centre   389  ( 13.403790, 10.324212, 32.247165 )
   WF centre   390  ( 18.997256,  9.999826, 13.550994 )
   WF centre   391  (  7.398326, 10.307946, 34.157479 )
   WF centre   392  ( 13.627634,  9.995041, 15.399193 )
   WF centre   393  ( 20.614197, 10.000545, 19.524720 )
   WF centre   394  ( 11.260705,  9.957606, 27.536197 )
   WF centre   395  ( 10.677921,  9.996280, 28.465926 )
   WF centre   396  ( 19.850556, 10.002489, 36.051281 )
   WF centre   397  ( 17.756680, 10.341808,  3.197881 )
   WF centre   398  (  8.377327, 10.000051, 23.740420 )
   WF centre   399  (  9.206037,  9.736830,  9.375049 )
   WF centre   400  (  7.636305,  9.999692, 11.540272 )
   WF centre   401  ( 10.806624, 10.057691, 27.783909 )
   WF centre   402  ( 12.857001, 10.001108, 23.692004 )
   WF centre   403  ( 16.769099, 10.003485, 22.132119 )
   WF centre   404  ( 13.542262, 10.270180, 29.660202 )
   WF centre   405  ( 19.550475, 10.275789, 21.470788 )
   WF centre   406  ( 22.336144,  9.994219, 31.817011 )
   WF centre   407  ( 18.452771, 10.004504, 19.505962 )
   WF centre   408  ( 14.122340,  9.859006, 13.609119 )
   WF centre   409  ( 13.177784, 10.001629, 24.385722 )
   WF centre   410  ( 17.432543, 10.006226, 19.506077 )
   WF centre   411  ( 13.579781,  9.721053, 23.602220 )
   WF centre   412  ( 18.909581, 10.083586,  5.979621 )
   WF centre   413  ( 21.205070, 10.289203, 36.015161 )
   WF centre   414  ( 19.659186,  9.720905, 25.627788 )
   WF centre   415  ( 13.585784, 10.274202, 23.601949 )
   WF centre   416  ( 16.325996, 10.268789, 21.509990 )
   WF centre   417  (  5.181274,  9.998157, 20.260552 )
   WF centre   418  ( 12.087714,  9.683049, 35.308012 )
   WF centre   419  ( 17.978856,  9.711231,  7.384080 )
   WF centre   420  ( 18.446857, 10.001254, 15.433119 )
   WF centre   421  ( 17.398649,  9.996666, 36.054478 )
   WF centre   422  ( 19.830502, 10.000824, 27.612876 )
   WF centre   423  ( 11.005335, 10.095316, 32.251199 )
   WF centre   424  ( 20.821355,  9.999836, 27.619900 )
   WF centre   425  (  7.602527, 10.004981,  7.260773 )
   WF centre   426  ( 14.487645, 10.189152, 21.647619 )
   WF centre   427  ( 15.508359, 10.053292, 13.032837 )
   WF centre   428  ( 12.482774,  9.996394, 13.439010 )
   WF centre   429  ( 15.121839,  9.709602, 29.660078 )
   WF centre   430  ( 20.329543, 10.268820, 11.783182 )
   WF centre   431  ( 14.854827,  9.621634,  1.070843 )
   WF centre   432  ( 10.040838, 10.001256,  9.290438 )
   WF centre   433  ( 16.959656, 10.021678, 17.733728 )
   WF centre   434  (  9.022492,  9.667689, 34.262932 )
   WF centre   435  (  9.196825, 10.257575,  9.371119 )
   WF centre   436  (  9.573608, 10.003543,  9.952721 )
   WF centre   437  ( 10.680992, 10.000704, 20.372721 )
   WF centre   438  ( 21.493864, 10.070571, 31.471388 )
   WF centre   439  ( 23.867234,  9.997387, 28.957062 )
   WF centre   440  (  7.304297,  9.742036, 25.760107 )
   WF centre   441  (  6.678156, 10.017018, 21.381679 )
   WF centre   442  ( 10.712209,  9.999794, 16.326707 )
   WF centre   443  (  6.941814, 10.041281, 30.771627 )
   WF centre   444  ( 18.827864, 10.315879, 35.555940 )
   WF centre   445  ( 13.802594, 10.021507, 21.476858 )
   WF centre   446  (  8.006641, 10.000249, 19.524715 )
   WF centre   447  ( 11.319496, 10.251301,  9.183495 )
   WF centre   448  ( 17.951570,  9.995433, 21.147184 )
   WF centre   449  ( 23.520358, 10.002864,  9.213920 )
   WF centre   450  ( 18.442725, 10.012316, 27.528382 )
   WF centre   451  (  7.441698,  9.679489, 29.795083 )
   WF centre   452  ( 14.006398,  9.751313, 31.899078 )
   WF centre   453  ( 14.972579, 10.001251, 27.564412 )
   WF centre   454  ( 11.858633,  9.999538, 22.116352 )
   WF centre   455  (  8.147904,  9.721543, 24.374529 )
   WF centre   456  (  7.505531,  9.882456,  2.993974 )
   WF centre   457  ( 21.700485,  9.970511,  1.905193 )
   WF centre   458  ( 19.827899,  9.720570, 13.480147 )
   WF centre   459  ( 21.316993,  9.742060, 25.760318 )
   WF centre   460  ( 19.176945,  9.997749, 27.030981 )
   WF centre   461  ( 21.353297, 10.256504, 13.705475 )
  
------------------------------------------------------------------------------

  Maximum imaginary part of the real-space Hamiltonian:     0.000000

  
------------------------------------------------------------------------------
      Maximum real part of the real-space Hamiltonian at each lattice 
point
          --------------------------------------------------------------
             Lattice point R           Max |H_ij(R)|
                   -1                     4.079355
                    0                    19.487953
                    1                     4.079355
          --------------------------------------------------------------

  Number of unit cells inside the principal layer:     1
  Number of Wannier Functions inside the principal layer:    43
  ------------------------- 2c2 Calculation Type: 
------------------------------

  Reading Gr_CNAC_Gr.unkg  file

  Sorting WFs into principal layers

  Inconsistent number of groups among principal layers: restarting 
sorting...

  Sorting WFs into principal layers

  Exiting.......
  Sorting techniques exhausted: Inconsistent number of groups among 
principal layers

---
Haichang Lu
Department of Engineering , University of Cambridge

Centre for Advanced Photonics and Electronics,9 JJ Thomson Ave, 
Cambridge
CB3 0FA, United Kingdom

St. Edmund's college
Tel: +44(0) 7778 392573

On 2017-05-16 14:47, Haichang Lu wrote:
> Dear All,
> Below is the input file:
> num_bands       = 554
> num_wann        =  461
> conv_tol        = 1.0d-7
> conv_window     = 20
> 
> translate_home_cell = .true.
> 
> !dis_win_max     = 7.5
> !dis_froz_max    = -2.30
> !dis_conv_tol    = 1.0d-9
> !dis_conv_window = 20
> !guiding_centres = .true.
> !num_print_cycles = 10
> 
> # Transport
> transport = .true.
> transport_mode = lcr
> tran_read_ht = .false.
> one_dim_axis = z
> fermi_energy = 0
> tran_win_min = -15
> tran_win_max = 15
> tran_energy_step = 0.01
> translation_centre_frac = 0.5 0.5 0.5
> tran_num_cell_ll = 1
> tran_num_rr = 54
> tran_num_ll = 54
> 
> dist_cutoff = 4.26
> dist_cutoff_mode = one_dim
> 
> ! SYSTEM
> begin unit_cell_cart
> Ang
>       28.620869129221902       0.000000000000000       
> 0.000000000000000
>        0.000000000000000      19.999999943129701       
> 0.000000000000000
>        0.000000000000000       0.000000000000000      
> 37.350000000000001
> end unit_cell_cart
> 
> ! KPOINTS
> mp_grid : 1 1 1
> gamma_only = .true.
> 
> begin kpoints
> 0.0000  0.0000  0.0000
> end kpoints
> 
> begin atoms_frac
>   H   0.7916897963503170   0.5000000000000000   0.0833335855333369
>   H   0.7913155200514430   0.5000000000000000   0.0183656282099692
>   H   0.7791431992206470   0.5000000000000000   0.5645279115988290
>   H   0.7897125368888751   0.5000000000000000   0.3058757052405540
>   H   0.7829463627080721   0.5000000000000000   0.4234103020578370
>   H   0.7782859350387951   0.5000000000000000   0.2458710458605870
>   H   0.2130143618650380   0.5000000000000000   0.3588307318330350
>   H   0.2106135864276420   0.5000000000000000   0.1988481685591510
>   H   0.7909185619247100   0.5000000000000000   0.1347422094847110
>   H   0.7916897963503170   0.5000000000000000   0.8566347766602950
>   H   0.7913155200514430   0.5000000000000000   0.7916668193369280
>   H   0.7897125368888751   0.5000000000000000   0.6297418295858240
>   H   0.7829463627080721   0.5000000000000000   0.7472764264031101
>   H   0.2130143618650380   0.5000000000000000   0.6826968561783050
>   H   0.2106135864276420   0.5000000000000000   0.9721493596861091
>   H   0.7909185619247100   0.5000000000000000   0.9080434006116691
>   H  -0.7916897963503171  -0.4999999999999999   0.0833335855333369
>   H  -0.7913155200514431  -0.4999999999999999   0.0183656282099692
>   H  -0.7791431992206470  -0.4999999999999999   0.5645279115988290
>   H  -0.7897125368888751  -0.4999999999999999   0.3058757052405540
>   H  -0.7829463627080721  -0.4999999999999999   0.4234103020578370
>   H  -0.7782859350387951  -0.4999999999999999   0.2458710458605870
>   H  -0.2130143618650380  -0.4999999999999999   0.3588307318330350
>   H  -0.2106135864276420  -0.4999999999999999   0.1988481685591510
>   H  -0.7909185619247100  -0.4999999999999999   0.1347422094847110
>   H  -0.7916897963503171  -0.4999999999999999   0.8566347766602950
>   H  -0.7913155200514431  -0.4999999999999999   0.7916668193369280
>   H  -0.7897125368888751  -0.4999999999999999   0.6297418295858240
>   H  -0.7829463627080721  -0.4999999999999999   0.7472764264031101
>   H  -0.2130143618650380  -0.4999999999999999   0.6826968561783050
>   H  -0.2106135864276420  -0.4999999999999999   0.9721493596861091
>   H  -0.7909185619247100  -0.4999999999999999   0.9080434006116691
>   C   0.6729156662837390   0.5000000000000000   0.0322057694193174
>   C   0.5860633006754320   0.5000000000000000   0.0322593010744883
>   C   0.5862035487667270   0.5000000000000000   0.0701230208318563
>   C   0.6730111800649791   0.5000000000000000   0.0701825151526256
>   C   0.7582779001913660   0.5000000000000000   0.0694128748721615
>   C   0.5429794153497181   0.5000000000000000   0.0136398495035532
>   C   0.7159222600512420   0.5000000000000000   0.0132857947974614
>   C   0.7580701906683771   0.5000000000000000   0.0325885057248087
>   C   0.5430518040335920   0.5000000000000000   0.0886410538667277
>   C   0.7161764564165680   0.5000000000000000   0.0890235964381273
>   C   0.6293512161501750   0.5000000000000000   0.0887866116352957
>   C   0.3707495517778540   0.5000000000000000   0.0138691859915831
>   C   0.7100575780461551   0.5000000000000000   0.5630999409967971
>   C   0.6254498231276130   0.5000000000000000   0.4590978850259961
>   C   0.5427776729176240   0.5000000000000000   0.5640117632252351
>   C   0.6268260676191521   0.5000000000000000   0.5664751285823861
>   C   0.6693077194087240   0.5000000000000000   0.5104709563837421
>   C   0.5838734492966430   0.5000000000000000   0.5109947742621080
>   C   0.6720848562201960   0.5000000000000000   0.1453443671660630
>   C   0.5423701133239530   0.5000000000000000   0.2016472474734690
>   C   0.5857078049960651   0.5000000000000000   0.1449010260227780
>   C   0.7125855186181920   0.5000000000000000   0.2031336373040880
>   C   0.5806003373203190   0.5000000000000000   0.4019578680972360
>   C   0.7066491885845430   0.5000000000000000   0.2411935801252300
>   C   0.6289853281709690   0.5000000000000000   0.1264239152504680
>   C   0.7528271895459711   0.5000000000000000   0.2967909283232960
>   C   0.6701775459043550   0.5000000000000000   0.4028111709414560
>   C   0.5442679390736830   0.5000000000000000   0.2396395787413580
>   C   0.7506639014781411   0.5000000000000000   0.4075700864928201
>   C   0.6259223798636610   0.5000000000000000   0.2387446780164340
>   C   0.5424157505876360   0.5000000000000000   0.3484920133994860
>   C   0.6709015158357080   0.5000000000000000   0.1830745114179230
>   C   0.7132981115705910   0.5000000000000000   0.3512122806967161
>   C   0.5850234718680230   0.5000000000000000   0.1826539444360870
>   C   0.6274622193340150   0.5000000000000000   0.2011588867630210
>   C   0.4570559687221881   0.5000000000000000   0.1263171724481740
>   C   0.7156492555177431   0.5000000000000000   0.1273846272935230
>   C   0.7570605345701631   0.5000000000000000   0.1480484956630520
>   C   0.7558469487007951   0.5000000000000000   0.1848443171960220
>   C   0.6729156662837390   0.5000000000000000   0.8055069605462740
>   C   0.5860633006754320   0.5000000000000000   0.8055604922014470
>   C   0.5862035487667270   0.5000000000000000   0.8434242119588160
>   C   0.6730111800649791   0.5000000000000000   0.8434837062795830
>   C   0.7582779001913660   0.5000000000000000   0.8427140659991210
>   C   0.5429794153497181   0.5000000000000000   0.7869410406305110
>   C   0.7159222600512420   0.5000000000000000   0.7865869859244210
>   C   0.7580701906683771   0.5000000000000000   0.8058896968517670
>   C   0.5430518040335920   0.5000000000000000   0.8619422449936880
>   C   0.7161764564165680   0.5000000000000000   0.8623247875650870
>   C   0.5806003373203190   0.5000000000000000   0.7258239924425070
>   C   0.7528271895459711   0.5000000000000000   0.6206570526685660
>   C   0.6701775459043550   0.5000000000000000   0.7266772952867270
>   C   0.7506639014781411   0.5000000000000000   0.7314362108380911
>   C   0.5424157505876360   0.5000000000000000   0.6723581377447570
>   C   0.7132981115705910   0.5000000000000000   0.6750784050419850
>   C   0.6293512161501750   0.5000000000000000   0.8620878027622541
>   C   0.3707495517778540   0.5000000000000000   0.7871703771185400
>   C   0.6720848562201960   0.5000000000000000   0.9186455582930210
>   C   0.5441170903208520   0.5000000000000000   0.9749484386004280
>   C   0.5857078049960651   0.5000000000000000   0.9182022171497360
>   C   0.7160794726119890   0.5000000000000000   0.9764348284310469
>   C   0.6289853281709690   0.5000000000000000   0.8997251063774260
>   C   0.6709015158357080   0.5000000000000000   0.9563757025448830
>   C   0.5850234718680230   0.5000000000000000   0.9559551355630441
>   C   0.6309561733278130   0.5000000000000000   0.9744600778899790
>   C   0.4570559687221881   0.5000000000000000   0.8996183635751330
>   C   0.7156492555177431   0.5000000000000000   0.9006858184204830
>   C   0.7570605345701631   0.5000000000000000   0.9213496867900080
>   C   0.7575939256976930   0.5000000000000000   0.9581455083229811
>   C  -0.6729156662837391  -0.4999999999999999   0.0322057694193174
>   C  -0.5860633006754320  -0.4999999999999999   0.0322593010744883
>   C  -0.5862035487667271  -0.4999999999999999   0.0701230208318563
>   C  -0.6730111800649791  -0.4999999999999999   0.0701825151526256
>   C  -0.7582779001913661  -0.4999999999999999   0.0694128748721615
>   C  -0.5429794153497182  -0.4999999999999999   0.0136398495035532
>   C  -0.7159222600512422  -0.4999999999999999   0.0132857947974614
>   C  -0.7580701906683771  -0.4999999999999999   0.0325885057248087
>   C  -0.5430518040335920  -0.4999999999999999   0.0886410538667277
>   C  -0.7161764564165681  -0.4999999999999999   0.0890235964381273
>   C  -0.6293512161501750  -0.4999999999999999   0.0887866116352957
>   C  -0.3707495517778540  -0.4999999999999999   0.0138691859915831
>   C  -0.7100575780461551  -0.4999999999999999   0.5630999409967971
>   C  -0.6254498231276131  -0.4999999999999999   0.4590978850259961
>   C  -0.5427776729176241  -0.4999999999999999   0.5640117632252351
>   C  -0.6268260676191522  -0.4999999999999999   0.5664751285823861
>   C  -0.6693077194087241  -0.4999999999999999   0.5104709563837421
>   C  -0.5838734492966431  -0.4999999999999999   0.5109947742621080
>   C  -0.6720848562201961  -0.4999999999999999   0.1453443671660630
>   C  -0.5423701133239531  -0.4999999999999999   0.2016472474734690
>   C  -0.5857078049960651  -0.4999999999999999   0.1449010260227780
>   C  -0.7125855186181921  -0.4999999999999999   0.2031336373040880
>   C  -0.5806003373203191  -0.4999999999999999   0.4019578680972360
>   C  -0.7066491885845431  -0.4999999999999999   0.2411935801252300
>   C  -0.6289853281709690  -0.4999999999999999   0.1264239152504680
>   C  -0.7528271895459712  -0.4999999999999999   0.2967909283232960
>   C  -0.6701775459043551  -0.4999999999999999   0.4028111709414560
>   C  -0.5442679390736831  -0.4999999999999999   0.2396395787413580
>   C  -0.7506639014781411  -0.4999999999999999   0.4075700864928201
>   C  -0.6259223798636611  -0.4999999999999999   0.2387446780164340
>   C  -0.5424157505876361  -0.4999999999999999   0.3484920133994860
>   C  -0.6709015158357080  -0.4999999999999999   0.1830745114179230
>   C  -0.7132981115705911  -0.4999999999999999   0.3512122806967161
>   C  -0.5850234718680231  -0.4999999999999999   0.1826539444360870
>   C  -0.6274622193340151  -0.4999999999999999   0.2011588867630210
>   C  -0.4570559687221880  -0.4999999999999999   0.1263171724481740
>   C  -0.7156492555177432  -0.4999999999999999   0.1273846272935230
>   C  -0.7570605345701631  -0.4999999999999999   0.1480484956630520
>   C  -0.7558469487007951  -0.4999999999999999   0.1848443171960220
>   C  -0.6729156662837391  -0.4999999999999999   0.8055069605462740
>   C  -0.5860633006754320  -0.4999999999999999   0.8055604922014470
>   C  -0.5862035487667271  -0.4999999999999999   0.8434242119588160
>   C  -0.6730111800649791  -0.4999999999999999   0.8434837062795830
>   C  -0.7582779001913661  -0.4999999999999999   0.8427140659991210
>   C  -0.5429794153497182  -0.4999999999999999   0.7869410406305110
>   C  -0.7159222600512422  -0.4999999999999999   0.7865869859244210
>   C  -0.7580701906683771  -0.4999999999999999   0.8058896968517670
>   C  -0.5430518040335920  -0.4999999999999999   0.8619422449936880
>   C  -0.7161764564165681  -0.4999999999999999   0.8623247875650870
>   C  -0.5806003373203191  -0.4999999999999999   0.7258239924425070
>   C  -0.7528271895459712  -0.4999999999999999   0.6206570526685660
>   C  -0.6701775459043551  -0.4999999999999999   0.7266772952867270
>   C  -0.7506639014781411  -0.4999999999999999   0.7314362108380911
>   C  -0.5424157505876361  -0.4999999999999999   0.6723581377447570
>   C  -0.7132981115705911  -0.4999999999999999   0.6750784050419850
>   C  -0.6293512161501750  -0.4999999999999999   0.8620878027622541
>   C  -0.3707495517778540  -0.4999999999999999   0.7871703771185400
>   C  -0.6720848562201961  -0.4999999999999999   0.9186455582930210
>   C  -0.5441170903208521  -0.4999999999999999   0.9749484386004280
>   C  -0.5857078049960651  -0.4999999999999999   0.9182022171497360
>   C  -0.7160794726119891  -0.4999999999999999   0.9764348284310469
>   C  -0.6289853281709690  -0.4999999999999999   0.8997251063774260
>   C  -0.6709015158357080  -0.4999999999999999   0.9563757025448830
>   C  -0.5850234718680231  -0.4999999999999999   0.9559551355630441
>   C  -0.6309561733278130  -0.4999999999999999   0.9744600778899790
>   C  -0.4570559687221880  -0.4999999999999999   0.8996183635751330
>   C  -0.7156492555177432  -0.4999999999999999   0.9006858184204830
>   C  -0.7570605345701631  -0.4999999999999999   0.9213496867900080
>   C  -0.7575939256976931  -0.4999999999999999   0.9581455083229811
>   C   0.5000000000000000   0.5000000000000000   0.0699927967458334
>   C   0.5000000000000000   0.5000000000000000   0.0322510549594650
>   C   0.5000000000000000   0.5000000000000000   0.2969510463517080
>   C   0.5000000000000000   0.5000000000000000   0.4043188842729510
>   C   0.5000000000000000   0.5000000000000000   0.1451349618570710
>   C   0.5000000000000000   0.5000000000000000   0.1827134961476530
>   C   0.5000000000000000   0.5000000000000000   0.8432939878727941
>   C   0.5000000000000000   0.5000000000000000   0.8055522460864220
>   C   0.5000000000000000   0.5000000000000000   0.6208171706969800
>   C   0.5000000000000000   0.5000000000000000   0.7281850086182210
>   C   0.5000000000000000   0.5000000000000000   0.9184361529840311
>   C   0.5000000000000000   0.5000000000000000   0.9560146872746120
>   N   0.5410829445468121   0.5000000000000000   0.4213075446676921
>   N   0.6685000360612060   0.5000000000000000   0.5837210067491560
>   N   0.6669424290904130   0.5000000000000000   0.4759064451312000
>   N   0.5439253285960340   0.5000000000000000   0.5289652747441830
>   N   0.5845689064938940   0.5000000000000000   0.4760551744834840
>   N   0.7105763742774670   0.5000000000000000   0.5276403204014351
>   N   0.7105222874689660   0.5000000000000000   0.4232186752789690
>   N   0.5847595817591159   0.5000000000000000   0.5842917220858700
>   N   0.6268984443976630   0.5000000000000000   0.5302549077099270
>   N   0.6258415990618180   0.5000000000000000   0.4210226491485590
>   N   0.7506160617192740   0.5000000000000000   0.5810730858375940
>   N   0.6659470073675330   0.5000000000000000   0.2581825661711530
>   N   0.5416603132741310   0.5000000000000000   0.3132016776997550
>   N   0.6719078862969961   0.5000000000000000   0.3673077606479680
>   N   0.7149751632917250   0.5000000000000000   0.3159591370745861
>   N   0.5829958215370810   0.5000000000000000   0.3664042214230470
>   N   0.5846506244251990   0.5000000000000000   0.2567294130469170
>   N   0.7552137767770520   0.5000000000000000   0.3713063948367240
>   N   0.7482619786482662   0.5000000000000000   0.2605804847512340
>   N   0.5410829445468121   0.5000000000000000   0.7451736690129650
>   N   0.7105222874689660   0.5000000000000000   0.7470847996242400
>   N   0.6258415990618180   0.5000000000000000   0.7448887734938301
>   N   0.5416603132741310   0.5000000000000000   0.6370678020450260
>   N   0.6719078862969961   0.5000000000000000   0.6911738849932390
>   N   0.7149751632917250   0.5000000000000000   0.6398252614198570
>   N   0.5829958215370810   0.5000000000000000   0.6902703457683180
>   N   0.7552137767770520   0.5000000000000000   0.6951725191819970
>   N  -0.5410829445468122  -0.4999999999999999   0.4213075446676921
>   N  -0.6685000360612061  -0.4999999999999999   0.5837210067491560
>   N  -0.6669424290904131  -0.4999999999999999   0.4759064451312000
>   N  -0.5439253285960342  -0.4999999999999999   0.5289652747441830
>   N  -0.5845689064938942  -0.4999999999999999   0.4760551744834840
>   N  -0.7105763742774671  -0.4999999999999999   0.5276403204014351
>   N  -0.7105222874689661  -0.4999999999999999   0.4232186752789690
>   N  -0.5847595817591160  -0.4999999999999999   0.5842917220858700
>   N  -0.6268984443976631  -0.4999999999999999   0.5302549077099270
>   N  -0.6258415990618181  -0.4999999999999999   0.4210226491485590
>   N  -0.7506160617192741  -0.4999999999999999   0.5810730858375940
>   N  -0.6659470073675331  -0.4999999999999999   0.2581825661711530
>   N  -0.5416603132741310  -0.4999999999999999   0.3132016776997550
>   N  -0.6719078862969961  -0.4999999999999999   0.3673077606479680
>   N  -0.7149751632917251  -0.4999999999999999   0.3159591370745861
>   N  -0.5829958215370811  -0.4999999999999999   0.3664042214230470
>   N  -0.5846506244251991  -0.4999999999999999   0.2567294130469170
>   N  -0.7552137767770522  -0.4999999999999999   0.3713063948367240
>   N  -0.7482619786482662  -0.4999999999999999   0.2605804847512340
>   N  -0.5410829445468122  -0.4999999999999999   0.7451736690129650
>   N  -0.7105222874689661  -0.4999999999999999   0.7470847996242400
>   N  -0.6258415990618181  -0.4999999999999999   0.7448887734938301
>   N  -0.5416603132741310  -0.4999999999999999   0.6370678020450260
>   N  -0.6719078862969961  -0.4999999999999999   0.6911738849932390
>   N  -0.7149751632917251  -0.4999999999999999   0.6398252614198570
>   N  -0.5829958215370811  -0.4999999999999999   0.6902703457683180
>   N  -0.7552137767770522  -0.4999999999999999   0.6951725191819970
>   N   0.5000000000000000   0.5000000000000000   0.5823584575610350
>   N   0.5000000000000000   0.5000000000000000   0.3671738149164150
>   N   0.5000000000000000   0.5000000000000000   0.2591481079130980
>   N   0.5000000000000000   0.5000000000000000   0.6910399392616872
> end atoms_frac
> 
> begin projections
> random
> end projections
> 
> 
> 
> ---
> Haichang Lu
> Department of Engineering , University of Cambridge
> 
> Centre for Advanced Photonics and Electronics,9 JJ Thomson Ave, 
> Cambridge
> CB3 0FA, United Kingdom
> 
> St. Edmund's college
> Tel: +44(0) 7778 392573
> 
> On 2017-05-16 10:11, Haichang Lu wrote:
>> Dear All,
>> I am conducting lcr transport calculation while I found a message in
>> the end of my unfinished calculation.
>> Reading CNNRAC_LCR.unkg  file
>> 
>>  Sorting WFs into principal layers
>> 
>>  Inconsistent number of groups among principal layers: restarting 
>> sorting...
>> 
>>  Sorting WFs into principal layers
>> 
>>  Exiting.......
>>  Sorting techniques exhausted: Inconsistent number of groups among
>> principal layers
>> 
>> I set number of unit cell in side the principle layers into 1 and
>> number of wannier functions inside the principle layer into 54, which
>> is the number of wannier function of a unit cell of lead.
>> 
>> I only put one unit cell in the left and right lead.
>> 
>> However, when I calculate your tutorial of example 15 of defect CNT, I
>> found lcr need 4 Principle layers, with 2 at each end.
>> 
>> I wonder if only 1 unit cell at each lead is enough? Or more for 
>> buffer region.
>> 
>> And can anyone explain what is sorted index and unsorted index in
>> principle layer sorting procedure?
> _______________________________________________
> Wannier mailing list
> Wannier at quantum-espresso.org
> http://mailman.qe-forge.org/cgi-bin/mailman/listinfo/wannier
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