[QE-users] QE-GPU Running Error

Hazra, Shilpa shazra3 at uic.edu
Tue Sep 24 18:36:10 CEST 2024


Hello,

I am using the cuda version of Quantum Espresso. The input and the job submission script I am using are written bellow.


INPUT:

&control
    calculation = 'vc-relax'
    prefix = 'silicon'
    outdir = './tmp/'
    pseudo_dir = './'
    etot_conv_thr = 1e-5
    forc_conv_thr = 1e-4
/

&system
    ibrav=2, celldm(1) =14,
    nat=2, ntyp=1,
    ecutwfc=30
/

&electrons
    conv_thr=1e-8
/

&ions
/

&cell
    cell_dofree='ibrav'
/

ATOMIC_SPECIES
  Si  28.0855  Si.pbe-n-kjpaw_psl.1.0.0.UPF

ATOMIC_POSITIONS (alat)
  Si 0.00 0.00 0.00 0 0 0
  Si 0.25 0.25 0.25 0 0 0

K_POINTS (automatic)
  6 6 6 1 1 1
~
~
SCRIPT:

#!/bin/bash
#SBATCH --job-name="test2"
#SBATCH --output="test2.out"
#SBATCH --partition=gpuA40x4
#SBATCH --mem=16G
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=1
#SBATCH --cpus-per-task=16   # spread out to use 1 core per numa, set to 64 if tasks is 1
#SBATCH --constraint="scratch"
#SBATCH --gpus-per-node=4
#SBATCH --gpu-bind=closest   # select a cpu close to gpu on pci bus topology
#SBATCH --account=bcox-delta-gpu    # <- match to a "Project" returned by the "accounts" command
#SBATCH -t 08:00:00
#SBATCH -e slurm-%j.err
#SBATCH -o slurm-%j.out

module reset
module load nvhpc/22.11
module load openmpi/4.1.5+cuda
module load quantum-espresso/7.3.1+cuda

export OMP_NUM_THREADS=16  # if code is not multithreaded, otherwise set to 8 or 16
srun pw.x -N 1 -n 1 test2.in > test2.out

Moreover, the job is running well. But I am not getting any output data printed in the output file even after running the job for 30 hours. Along with that, I am getting the following error massage in the .err file.

libgomp: TODO
srun: error: gpub075: task 0: Exited with exit code 1

I am really not getting why this error is happening and the error is coming. If you could help me with solving this problem, it would be really beneficial for me.  Thank you.

Sincerely,
Shilpa Hazra

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