[QE-users] Phonon calculation with DFT-D3 correction
Sayandeep GHOSH
Sayandeep.GHOSH at umons.ac.be
Tue Aug 13 16:44:58 CEST 2024
Hello all,
Currently I was trying to calculate the phonon for kagome materials. Hence, I have to consider the DFT-D3 correction.
>From what I've gathered from the d3hess.x documentation, the process to include dispersion effects on vibrational frequencies should be as follows:
1. Perform a relaxation or SCF calculation.
2. Run d3hess.x.
3. Run ph.x.
However, I was getting the following error in the second step. The error message is as follows:
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
task # 12
from pbcgdisp : error # 1
Atom displacement not implemented with the threebody term
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
I incorporated the changes which was discussed in the following
Re: [QE-users] Phonon calculation with DFT-D3 correction (mail-archive.com)<https://www.mail-archive.com/users@lists.quantum-espresso.org/msg44417.html>
Please find the input for scf calculation (scf.in)
&CONTROL
calculation = 'scf',
restart_mode = 'from_scratch'
prefix = 'CVS',
outdir = './output',
verbosity = 'high'
tstress = .true.
tprnfor = .true.
etot_conv_thr = 1.0D-12
forc_conv_thr = 1.0D-7
/
&SYSTEM
ibrav = 4
celldm(1) = 10.636266035055442
celldm(3) = 1.66503783444
nat = 9
ntyp = 3
ecutwfc = 37
ecutrho = 148
occupations = 'smearing',
smearing = 'gaussian',
degauss = 0.0015,
vdw_corr = 'grimme-d3',
dftd3_threebody = .false.
/
&ELECTRONS
electron_maxstep = 200
conv_thr = 1.D-6
/
ATOMIC_SPECIES
ATOMIC_POSITIONS (crystal)
Cs -0.0000000000 0.0000000000 0.5000000000
V 0.5000000000 0.0000000000 -0.0000000000
V -0.0000000000 0.5000000000 0.0000000000
V 0.5000000000 0.5000000000 0.0000000000
Sb 0.6666666870 0.3333333430 0.7485578106
Sb 0.3333333130 0.6666666270 0.2514421894
Sb 0.3333333130 0.6666666270 0.7485578106
Sb 0.6666666870 0.3333333430 0.2514421894
Sb -0.0000000000 0.0000000000 0.0000000000
K_POINTS automatic
9 9 4 0 0 0
######################################################
And the input file for d3hess.x (d3hess.in)
&INPUT
prefix = 'CVS',
outdir = './output',
filhess = 'CVS.hess',
step = 1.0d-3
/
###########################################################
Could anyone help me to figure out the error?
Thanks in advance.
Regards,
Sayandeep Ghosh
Laboratory for Chemistry of Novel Materials, Materials Research Institute,
Université de Mons - UMONS
Place du Parc, 20, B-7000 MONS (Belgium)
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