[QE-users] Problems with scf calculation in qe 7.1 and 7.2
lplokijuhygt at tutanota.com
lplokijuhygt at tutanota.com
Fri Apr 7 19:18:52 CEST 2023
Dear experts,
I installed qe-7.2 with intel oneapi on ubuntu 22-04 running under wsl. When I run 'delta at LAPTOP-650A6EI8:~/qe-7.2/wannier90-3.1.0/examples/example08$ mpirun -np 2 pw.x <iron.scf > scf.out' I got the next message:
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
libc.so <http://libc.so/>.6 00007FC441C12520 Unknown Unknown Unknown
Unknown 00007FFFFBFE27B8 Unknown Unknown Unknown
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
libc.so <http://libc.so/>.6 00007F0E2AE12520 Unknown Unknown Unknown
Unknown 00007FFFD05B2538 Unknown Unknown Unknown
--------------------------------------------------------------------------
mpirun detected that one or more processes exited with non-zero status, thus causing
the job to be terminated. The first process to do so was:
Process name: [[16591,1],0]
Exit code: 174
When I run simply delta at LAPTOP-650A6EI8:~/qe-7.2/wannier90-3.1.0/examples/example08$ pw.x < iron.scf > scf.out I got
'pw.x:19850 terminated with signal 11 at PC=7fffc97b2b38 SP=7fffc97b29d8. Backtrace:
[0x7fffc97b2b38]'
The same problem was with delta at LAPTOP-650A6EI8:~/qe-7.2/wannier90-3.1.0/examples/example06$ mpirun -np 2 pw.x < copper.scf > scf.out and also without mpirun. But no problems turned out with silicon and diamond. In case of iron and copper scf.out information ended after the first iteration.
I compiled qe 7.2 with ./configure F90=mpiifort MPIF90=mpiifort CC=mpicc CXX=icc F77=mpiifort LAPACK_LIBS="-L${MKLROOT}/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmkl_blacs_intelmpi_lp64 -lpthread -lm -ldl" BLAS_LIBS="-L${MKLROOT}/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmkl_blacs_intelmpi_lp64 -lpthread -lm -ldl" SCALAPACK_LIBS="-L${MKLROOT}/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmkl_blacs_intelmpi_lp64 -lpthread -lm -ldl"
taken from High Performance Computing • Quantum Espresso Tutorial (pranabdas.github.io) <https://pranabdas.github.io/espresso/setup/hpc>.
The same output was with qe 7.1.
Could you kindly help me to resolve this issue,
Regards,
Serhi.
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