[QE-users] Error in scf calculation of large number of atoms
Matic
matic.poberznik at gmail.com
Thu Mar 4 15:52:12 CET 2021
Dear Pooja,
> Inspite of multiplying the lattice constant by 2, I get the same error.
You have to think about what ibrav=2 means and then which supercell you
obtain by the procedure you described in xcrysden. A small hint try
googling: primitive vs conventional fcc crystal unit cell, for
convenience here is the description of the ibrav parameter in QE:
https://www.quantum-espresso.org/Doc/INPUT_PW.html#idm200
Best Regards,
Matic Poberznik
--
Matic Poberznik
CNR-IOM, Trieste, Italy
> On Thu, 4 Mar 2021, 7:00 pm 박민규, <minkyupark at ulsan.ac.kr
> <mailto:minkyupark at ulsan.ac.kr>> wrote:
>
> Dear Pooja,
>
> Try to check your structure again.
> It does not look like a supercell,
> because you did not change the lattice constant accordingly.
>
> Best,
> ==================================================
> Minkyu Park
> Research Institute of Basic Sciences, University of Ulsan,
> 93, Daehak-ro, Nam-gu, Ulsan, 44610 Republic of Korea
> minkyupark at ulsan.ac.kr <mailto:minkyupark at ulsan.ac.kr>
> +82-52-259-1473
> ==================================================
>
>> On 4 Mar 2021, at 6:16 PM, Pooja Vyas <poojavyas595 at gmail.com
>> <mailto:poojavyas595 at gmail.com>> wrote:
>>
>> All details are in input files. How do I solve this problem?
>>
>> On Thu, Mar 4, 2021 at 2:44 PM sally issa
>> <sally.issa1 at outlook.com <mailto:sally.issa1 at outlook.com>> wrote:
>>
>> I have the same calcul with 128 atoms, sometimes it appears
>> this error but I change the K mesh or the periodic condition
>> are not good one.
>> What you use for k point?
>>
>>> On 4 Mar 2021, at 09:57, Pooja Vyas <poojavyas595 at gmail.com
>>> <mailto:poojavyas595 at gmail.com>> wrote:
>>>
>>>
>>> Dear users,
>>> I have an input script (scf1.in <http://scf1.in/> attached
>>> below) of CaO with 2 atoms. It runs fine for scf calculation.
>>> I want to compute the energy of CaO with 64 atoms. So I
>>> opened scf1.in <http://scf1.in/> file in XCrysden so it
>>> displayed 27 atoms and then I followed the below steps:
>>> 1) Display->Unit of repetition -> translational asymmetric unit
>>> 2) Above step reduced 27 atoms to 4 Ca and 4 O atoms
>>> totalling 8.
>>> 3) Then I followed Modify->number of units drawn and
>>> selected 2,2,2 in it. So, it displayed 8 atoms*(2*2*2)= 64
>>> atoms.
>>>
>>> I took these atomic positions and made the file scf2.in
>>> <http://scf2.in/> attached below. But on running that script
>>> for scf calculation, it shows me the following error:
>>>
>>> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
>>> task # 1
>>> from check_atoms : error # 1
>>> atoms # 1 and # 2 differ by lattice vector (-1, 1,
>>> 0) in crystal axis
>>> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
>>>
>>> The error is due to overlapping of atoms. But can anyone let
>>> me know how I can compute the energy of 64 atoms? How do I
>>> figure out the equivalent atomic positions which causes this
>>> error?
>>>
>>>
>>> <scf1.in <http://scf1.in/>>
>>> <scf2.in <http://scf2.in/>>
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