[QE-users] QE v.6.8 installation on M1 mac

[Viejay Ordillo]

Dear Ye,

Thank you for the advice. I followed the instructions from the link you
provided for CMake installation and while running CTests, it returned me
this error:

Program received signal SIGBUS: Access to an undefined portion of a memory
object.


Backtrace for this error:

#0  0x100e189b7

#1  0x100e17a4b

#2  0x19a7b2c43

#3  0x100a43c7b

--------------------------------------------------------------------------

Primary job  terminated normally, but 1 process returned

a non-zero exit code. Per user-direction, the job has been aborted.

--------------------------------------------------------------------------

--------------------------------------------------------------------------

mpiexec noticed that process rank 0 with PID 0 on node Mr-Holmes exited on
signal 10 (Bus error: 10).

--------------------------------------------------------------------------



95% tests passed, 1 tests failed out of 21


Label Time Summary:

unit    =  17.16 sec*proc (21 tests)


Total Test time (real) =   2.65 sec


The following tests FAILED:

19 - test_qe_lapack_zdotc (Failed)

Errors while running CTest

Is this something to worry about? Or I can ignore this and proceed with the
installation?

Viejay

On Sun, Dec 19, 2021 at 1:15 AM Ye Luo <xw111luoye at gmail.com> wrote:

> Also make sure you have a clean source directory before you start. Module
> files built previously may cause troubles.
> Ye
> ===================
> Ye Luo, Ph.D.
> Computational Science Division & Leadership Computing Facility
> Argonne National Laboratory
>
>
> On Sat, Dec 18, 2021 at 11:10 AM Ye Luo <xw111luoye at gmail.com> wrote:
>
>> Could you try CMake?
>> https://gitlab.com/QEF/q-e/-/wikis/Developers/CMake-build-system
>> Ye
>> ===================
>> Ye Luo, Ph.D.
>> Computational Science Division & Leadership Computing Facility
>> Argonne National Laboratory
>>
>>
>> On Sat, Dec 18, 2021 at 5:20 AM Viejay Ordillo <vjordillo at gmail.com>
>> wrote:
>>
>>> Dear QE users,
>>> I've been trying to install quantum espresso v.6.8 on my mac computer
>>> (M1 chip), but I keep getting errors along the process. Configuring with *./configure
>>> CPP="gcc -E" *was successful. However, when I tried to use *make all *command,
>>> it threw me this error:
>>> checking build system type... Invalid configuration
>>> `aarch64-apple-darwin20.6.0': machine `aarch64-apple' not recognized
>>> configure: error: /bin/sh ./config/config.sub aarch64-apple-darwin20.6.0
>>> failed
>>> if test -d src/ ; then \
>>> ( cd src/ ; make ) ; fi
>>> make[3]: *** No rule to make target `device_auxfunc_mod.o', needed by
>>> `deviceXlib_mod.o'. Stop.
>>> make[2]: *** [libsrc] Error 2
>>> make[1]: *** [libcuda_devxlib] Error 2
>>> make: *** [libcuda] Error 2
>>> I found a similar case from QE mailing list threads (
>>> https://www.mail-archive.com/users@lists.quantum-espresso.org/msg41460.html
>>> <https://www.researchgate.net/deref/https%3A%2F%2Fwww.mail-archive.com%2Fusers%40lists.quantum-espresso.org%2Fmsg41460.html>).
>>> I followed the instructions from there but in the end, I was still met with
>>> an error like this:
>>> mpif90 -O3 -g -fallow-argument-mismatch -cpp -D__FFTW -D__MPI
>>> -I/Users/houtarou/qe-6.8//external/devxlib/src
>>> -I/Users/houtarou/qe-6.8//include -I/Users/houtarou/qe-6.8//FoX/finclude
>>> -I../UtilXlib -I../external/devxlib/src -c virtual_v2.f90
>>> mpif90 -g -o virtual_v2.x virtual_v2.o libupf.a -L/usr/local/lib
>>> -llapack -lblas -lblas
>>> Undefined symbols for architecture arm64:
>>> "___mp_MOD_mp_sum_rm", referenced from:
>>> _init_us_0_ in libupf.a(init_us_0.o)
>>> "___mp_MOD_mp_sum_rt", referenced from:
>>> _init_us_0_ in libupf.a(init_us_0.o)
>>> "___mp_MOD_mp_sum_rv", referenced from:
>>> _init_us_0_ in libupf.a(init_us_0.o)
>>> "_divide_", referenced from:
>>> _init_us_0_ in libupf.a(init_us_0.o)
>>> "_start_clock_", referenced from:
>>> _init_us_0_ in libupf.a(init_us_0.o)
>>> "_stop_clock_", referenced from:
>>> _init_us_0_ in libupf.a(init_us_0.o)
>>> ld: symbol(s) not found for architecture arm64
>>> collect2: error: ld returned 1 exit status
>>> make[1]: *** [virtual_v2.x] Error 1
>>> make: *** [libupf] Error 1
>>> There's no update from the thread until now. I don't know how to move
>>> forward. I hope you could help with this. Thank you.
>>> Regards,
>>> Viejay Ordillo
>>> Graduate Student
>>> University of the Philippines Diliman
>>> _______________________________________________
>>> Quantum ESPRESSO is supported by MaX (www.max-centre.eu)
>>> users mailing list users at lists.quantum-espresso.org
>>> https://lists.quantum-espresso.org/mailman/listinfo/users
>>
>> _______________________________________________
> Quantum ESPRESSO is supported by MaX (www.max-centre.eu)
> users mailing list users at lists.quantum-espresso.org
> https://lists.quantum-espresso.org/mailman/listinfo/users
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