[QE-users] [External Email] Re: Error in compiling and installing QE

[Hari Paudyal]

Hi Pooja,

I think you are working in a directory (user/local/bin) where you do not
have permission. Ask your administrator/cluster manager for permission.

Best,
Hari Paudyal
Binghamton University, SUNY NY

On Mon, Jun 22, 2020 at 2:22 PM Pooja Vyas <poojavyas595 at gmail.com> wrote:

> Dear users,
> I even met with an error after the command "make install" which are as
> follows:
>
>
> cp: cannot create regular file '/usr/local/bin/wfdd.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/cppp.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/cp.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/manycp.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/head.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/bse_main.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/gww.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/gww_fit.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/pw4gww.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/neb.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/path_interpolation.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/phcg.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/fd_ef.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/fd_ifc.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/fd.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/ph.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/q2qstar.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/lambda.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/alpha2f.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/q2r.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/dynmat.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/matdyn.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/q2trans.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/fqha.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/q2trans_fd.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/wannier_ham.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/fermi_proj.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/wannier_plot.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/dos.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/plan_avg.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/pmw.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/bgw2pw.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/pw_export.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/epsilon.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/bands.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/plotproj.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/average.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/pawplot.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/projwfc.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/plotrho.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/wfck2r.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/plotband.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/fs.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/sumpdos.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/pw2bgw.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/fermi_velocity.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/importexport_binary.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/pw2wannier90.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/initial_state.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/pp.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/pw2gw.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/molecularpdos.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/pw.x': Permission denied
> cp: cannot create regular file
> '/usr/local/bin/generate_vdW_kernel_table.x': Permission denied
> cp: cannot create regular file
> '/usr/local/bin/generate_rVV10_kernel_table.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/pwi2xsf.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/kpoints.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/ev.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/ibrav2cell.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/pwcond.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/iotk_print_kinds.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/iotk.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/turbo_lanczos.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/turbo_davidson.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/turbo_eels.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/turbo_spectrum.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/molecularnexafs.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/xspectra.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/spectra_correction.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/ld1.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/test.x': Permission denied
> cp: cannot create regular file '/usr/local/bin/interpolate.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/uspp2upf.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/fhi2upf.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/read_upf_tofile.x':
> Permission denied
> cp: cannot create regular file '/usr/local/bin/rrkj2upf.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/oldcp2upf.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/vdb2upf.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/fpmd2upf.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/virtual.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/upf2casino.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/ncpp2upf.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/casino2upf.x': Permission
> denied
> cp: cannot create regular file '/usr/local/bin/cpmd2upf.x': Permission
> denied
> make: *** [Makefile:273: install] Error 1
>
> On Mon, Jun 22, 2020 at 11:41 PM Pooja Vyas <poojavyas595 at gmail.com>
> wrote:
>
>> Dear users,
>> I'm trying to install QE-6.5, but I met with the following error which
>> appears multiple times while giving 'make all' command..Can anyone suggest
>> how do I install and compile perfectly without this error?
>> f951: Warning: Nonexistent include directory ‘../include/’
>> [-Wmissing-include-dirs]
>> mpif90 -O3 -g -fopenmp -x f95-cpp-input -fopenmp -D__OPENMP -D__FFTW
>> -D__MPI  -I/home/pooja/q-e-qe-6.2.0//include
>> -I/home/pooja/q-e-qe-6.2.0//FoX/finclude -I../include/ -I../../iotk/src
>> -I../../Modules -I../../FFTXlib -I../../LAXlib -I../../UtilXlib
>> -I../../KS_Solvers/Davidson -I../../KS_Solvers/CG -I../../dft-d3/ -c
>> set_vrs.f90
>> f951: Warning: Nonexistent include directory ‘../include/’
>> [-Wmissing-include-dirs]
>> mpif90 -O3 -g -fopenmp -x f95-cpp-input -fopenmp -D__OPENMP -D__FFTW
>> -D__MPI  -I/home/pooja/q-e-qe-6.2.0//include
>> -I/home/pooja/q-e-qe-6.2.0//FoX/finclude -I../include/ -I../../iotk/src
>> -I../../Modules -I../../FFTXlib -I../../LAXlib -I../../UtilXlib
>> -I../../KS_Solvers/Davidson -I../../KS_Solvers/CG -I../../dft-d3/ -c
>> setlocal.f90
>> f951: Warning: Nonexistent include directory ‘../include/’
>> [-Wmissing-include-dirs]
>> mpif90 -O3 -g -fopenmp -x f95-cpp-input -fopenmp -D__OPENMP -D__FFTW
>> -D__MPI  -I/home/pooja/q-e-qe-6.2.0//include
>> -I/home/pooja/q-e-qe-6.2.0//FoX/finclude -I../include/ -I../../iotk/src
>> -I../../Modules -I../../FFTXlib -I../../LAXlib -I../../UtilXlib
>> -I../../KS_Solvers/Davidson -I../../KS_Solvers/CG -I../../dft-d3/ -c
>> setup.f90
>> f951: Warning: Nonexistent include directory ‘../include/’
>> [-Wmissing-include-dirs]
>> mpif90 -O3 -g -fopenmp -x f95-cpp-input -fopenmp -D__OPENMP -D__FFTW
>> -D__MPI  -I/home/pooja/q-e-qe-6.2.0//include
>> -I/home/pooja/q-e-qe-6.2.0//FoX/finclude -I../include/ -I../../iotk/src
>> -I../../Modules -I../../FFTXlib -I../../LAXlib -I../../UtilXlib
>> -I../../KS_Solvers/Davidson -I../../KS_Solvers/CG -I../../dft-d3/ -c
>> spinor.f90
>> f951: Warning: Nonexistent include directory ‘../include/’
>> [-Wmissing-include-dirs]
>> mpif90 -O3 -g -fopenmp -x f95-cpp-input -fopenmp -D__OPENMP -D__FFTW
>> -D__MPI  -I/home/pooja/q-e-qe-6.2.0//include
>> -I/home/pooja/q-e-qe-6.2.0//FoX/finclude -I../include/ -I../../iotk/src
>> -I../../Modules -I../../FFTXlib -I../../LAXlib -I../../UtilXlib
>> -I../../KS_Solvers/Davidson -I../../KS_Solvers/CG -I../../dft-d3/ -c
>> sph_ind.f90
>> f951: Warning: Nonexistent include directory ‘../include/’
>> [-Wmissing-include-dirs]
>> mpif90 -O3 -g -fopenmp -x f95-cpp-input -fopenmp -D__OPENMP -D__FFTW
>> -D__MPI  -I/home/pooja/q-e-qe-6.2.0//include
>> -I/home/pooja/q-e-qe-6.2.0//FoX/finclude -I../include/ -I../../iotk/src
>> -I../../Modules -I../../FFTXlib -I../../LAXlib -I../../UtilXlib
>> -I../../KS_Solvers/Davidson -I../../KS_Solvers/CG -I../../dft-d3/ -c
>> stop_run.f90
>> f951: Warning: Nonexistent include directory ‘../include/’
>> [-Wmissing-include-dirs]
>> mpif90 -O3 -g -fopenmp -x f95-cpp-input -fopenmp -D__OPENMP -D__FFTW
>> -D__MPI  -I/home/pooja/q-e-qe-6.2.0//include
>> -I/home/pooja/q-e-qe-6.2.0//FoX/finclude -I../include/ -I../../iotk/src
>> -I../../Modules -I../../FFTXlib -I../../LAXlib -I../../UtilXlib
>> -I../../KS_Solvers/Davidson -I../../KS_Solvers/CG -I../../dft-d3/ -c
>> stres_cc.f90
>> f951: Warning: Nonexistent include directory ‘../include/’
>> [-Wmissing-include-dirs]
>> mpif90 -O3 -g -fopenmp -x f95-cpp-input -fopenmp -D__OPENMP -D__FFTW
>> -D__MPI  -I/home/pooja/q-e-qe-6.2.0//include
>> -I/home/pooja/q-e-qe-6.2.0//FoX/finclude -I../include/ -I../../iotk/src
>> -I../../Modules -I../../FFTXlib -I../../LAXlib -I../../UtilXlib
>> -I../../KS_Solvers/Davidson -I../../KS_Solvers/CG -I../../dft-d3/ -c
>> stres_ewa.f90
>> f951: Warning: Nonexistent include directory ‘../include/’
>> [-Wmissing-include-dirs]
>> mpif90 -O3 -g -fopenmp -x f95-cpp-input -fopenmp -D__OPENMP -D__FFTW
>> -D__MPI  -I/home/pooja/q-e-qe-6.2.0//include
>> -I/home/pooja/q-e-qe-6.2.0//FoX/finclude -I../include/ -I../../iotk/src
>> -I../../Modules -I../../FFTXlib -I../../LAXlib -I../../UtilXlib
>> -I../../KS_Solvers/Davidson -I../../KS_Solvers/CG -I../../dft-d3/ -c
>> stres_gradcorr.f90
>> f951: Warning: Nonexistent include directory ‘../include/’
>> [-Wmissing-include-dirs]
>> mpif90 -O3 -g -fopenmp -x f95-cpp-input -fopenmp -D__OPENMP -D__FFTW
>> -D__MPI  -I/home/pooja/q-e-qe-6.2.0//include
>> -I/home/pooja/q-e-qe-6.2.0//FoX/finclude -I../include/ -I../../iotk/src
>> -I../../Modules -I../../FFTXlib -I../../LAXlib -I../../UtilXlib
>> -I../../KS_Solvers/Davidson -I../../KS_Solvers/CG -I../../dft-d3/ -c
>> stres_har.f90
>> f951: Warning: Nonexistent include directory ‘../include/’
>> [-Wmissing-include-dirs]
>> mpif90 -O3 -g -fopenmp -x f95-cpp-input -fopenmp -D__OPENMP -D__FFTW
>> -D__MPI  -I/home/pooja/q-e-qe-6.2.0//include
>> -I/home/pooja/q-e-qe-6.2.0//FoX/finclude -I../include/ -I../../iotk/src
>> -I../../Modules -I../../FFTXlib -I../../LAXlib -I../../UtilXlib
>> -I../../KS_Solvers/Davidson -I../../KS_Solvers/CG -
>> ......
>> Note that I hace gcc 9.3.0 version alrrady installed.
>> Any kind of help is appreciated
>> Thanks and regards
>>
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