[QE-users] Problem using hse calculation
Lorenzo Paulatto
paulatz at gmail.com
Thu Apr 2 09:18:53 CEST 2020
Hello Nawaf,
the HSE calculation has to do a self-consistency on the wavefunctions
that starts from a standard local-density PBE calculation. Note that the
HSE calculation, even when using the ACE algorithm, is orders of
magnitude longer than the PBE one.
It is the PBe calculation that converges in your case, the HSE one is
too heavy for your computer, it cannot even reach the first step when it
is killed (after 4 days).
regards
>
> while trying to do hse calculation ( 47 atoms ) the calculation is not
> terminating , it converges but ace calculation is not terminating.
> This is how the output file ends
>
> the Fermi energy is 7.5626 ev
>
> ! total energy = -7271.48782233 Ry
> Harris-Foulkes estimate = -7271.48803855 Ry
> estimated scf accuracy < 0.00023200 Ry
>
> convergence has been achieved in 11 iterations
>
> Using ACE for calculation of exact exchange
>
> EXX grid: 48141 G-vectors FFT dimensions: ( 45, 45, 45)
> Application 969344 exit codes: 1, 139
> Application 969344 resources: utime ~410607s, stime ~626186s, Rss
> ~43360, inblocks ~1310, outblocks ~0
> -----------------------------------------------------------------------------------------------------
>
> 18) perftools-base/7.0.0
> 19) PrgEnv-intel/6.0.4
> 20) intel/18.0.1.163 <http://18.0.1.163>
> 21) craype-network-aries
> 22) craype/2.5.13
> 23) cray-mpich/7.7.0
> 24) craype-hugepages2M
> 25) pbs/default
> cray-mpich/7.7.0 requires craype/1.00 or later
> 16.0.4(103):ERROR:105: Unable to locate a modulefile for
> 'craype-x86-skylake'
> 16.0.4(104):ERROR:105: Unable to locate a modulefile for
> 'craype-hugepages2M'
> Currently Loaded Modulefiles:
> 1) modules/3.2.10.6 <http://3.2.10.6>
> 2) alps/6.5.30-6.0.5.1_5.1__g60cce32.ari
> 3) nodestat/2.3.78-6.0.5.0_8.13__gbe57af8.ari
> 4) sdb/3.3.751-6.0.5.0_20.25__gb936019.ari
> 5) udreg/2.3.2-6.0.5.0_13.12__ga14955a.ari
> 6) ugni/6.0.14-6.0.5.0_16.9__g19583bb.ari
> 7) gni-headers/5.0.12-6.0.5.0_2.15__g2ef1ebc.ari
> 8) dmapp/7.1.1-6.0.5.0_49.8__g1125556.ari
> 9) xpmem/2.2.4-6.0.5.1_8.6__g35d5e73.ari
> 10) llm/21.3.467-6.0.5.0_25.1__g4c6f300.ari
> 11) nodehealth/5.5.7-6.0.5.0_9.8__g7732908.ari
> 12) system-config/3.5.2545-6.0.5.0_5.1__g8a8b20f.ari
> 13) sysadm/2.4.125-6.0.5.0_16.13__g98e00a9.ari
> 14) Base-opts/2.4.123-6.0.5.0_11.2__g6460790.ari
> 15) rca/2.2.16-6.0.5.0_15.34__g5e09e6d.ari
> 16) craype-network-aries
> 17) craype-hugepages2M
> 18) pbs/default
> 19) PrgEnv-intel/6.0.4
> 20) cray-fftw/3.3.6.2 <http://3.3.6.2>
> 21) intel/16.0.4.258
> 22) /home/apps/qe/6.2.0/modulefiles/int/16.0.4
> =>> PBS: job killed: walltime 345616 exceeded limit 345600
> aprun: Apid 969344: Caught signal Terminated, sending to application
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
> libintlc.so.5 00002AAAB1EA579D Unknown Unknown Unknown
> libintlc.so.5 00002AAAB1EA3637 Unknown Unknown Unknown
> pw.x 0000000020C32DA4 Unknown Unknown Unknown
> pw.x 0000000020C32BB6 Unknown Unknown Unknown
> pw.x 0000000020B9F659 Unknown Unknown Unknown
> pw.x 0000000020BA677E Unknown Unknown Unknown
> Unknown 00002AAAB7168B10 Unknown Unknown Unknown
> libpthread.so.0 00002AAAB7165785 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
>
> This is how the file listing modules terminates , the walltime is 96
> hours. I have attatched my input file . I have tried smaller parameters
> and smearing instead of tetrahedron , still the same error.
>
> Thank You.
> Nawaf A
> MSc Energy Science student
> IIT Bombay
>
>
>
>
>
>
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--
Lorenzo Paulatto - Paris
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