[QE-users] segfault with HSE06
Michal Krompiec
michal.krompiec at gmail.com
Mon Jul 8 14:27:05 CEST 2019
Hello,
I'm getting a segmentation fault when trying to run a HSE06 SCF calculation
in QE 6.4rc (built with gcc and OpenMPI). I got the same result regardless
of number of OMP threads (1-2) or MPI processes, it is also not because I'm
running out of memory. Increasing OMP_STACK_SIZE didn't help.
I'm using SG15 norm-conserving pseudopotentials.
This is the error message:
Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.
Backtrace for this error:
Backtrace for this error:
#0 0x2ba41caf6607 in ???
#1 0x2ba41caf586d in ???
#2 0x2ba41d9d5fdf in ???
#1 0x2ba41caf586d in ???
#2 0x2ba41d9d5fdf in ???
#3 0x481031 in __exx_MOD_exxinit._omp_fn.41
at
/home/hpcadmin/Cluster-packages/Apps/QE/q-e-qe-6.4-rc/PW/src/exx.f90:471
And this is the input file:
&CONTROL
nstep = 150
prefix = 'pz'
calculation = 'scf'
/
&SYSTEM
ecutwfc = 60
ecutrho = 240
occupations = 'smearing'
degauss = 0.03
smearing = 'marzari-vanderbilt'
assume_isolated = '2D'
ntyp = 3
nat = 10
ibrav = 0
vdw_corr='dft-d3'
nosym = .true.
input_dft = 'hse'
localization_thr = 0.005
/
&ELECTRONS
electron_maxstep = 1000
mixing_mode = 'plain'
mixing_beta = 0.3
mixing_ndim = 10
/
&IONS
ion_dynamics = 'bfgs'
/
ATOMIC_SPECIES
H 1 H_ONCV_PBE-1.0.upf
C 12 C_ONCV_PBE-1.0.upf
N 14 N_ONCV_PBE-1.0.upf
K_POINTS automatic
3 3 1 0 0 0
CELL_PARAMETERS angstrom
9.45000000000000 0.00000000000000 0.0
0.00000000000000 8.90954544295050 0.0
0.00000000000000 0.00000000000000 40.0
ATOMIC_POSITIONS angstrom
N 3.220157348 4.070243213 7.161850862
C 2.057591707 4.250681378 7.817575738
C 4.333273229 4.171146830 7.913403134
C 2.009345068 4.525337360 9.193044239
C 4.285082283 4.446195607 9.288766365
N 3.122476937 4.626559339 9.944547282
H 1.139008253 4.174089393 7.227702259
H 5.290517910 4.028527369 7.402554504
H 1.052120461 4.668162403 9.703968061
H 5.203598139 4.523590493 9.878655120
I would be grateful for any suggestions. In the meantime, we are upgrading
to 6.4.1 to see if this helps.
Best regards,
Michal Krompiec
Merck KGaA, Darmstadt, Germany & University of Southampton
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