[QE-users] imaginary frequency reported for fixed atoms by ph.x
兵临城下
vegalew at qq.com
Mon Feb 11 09:19:48 CET 2019
Dear all,
To save CPU time, we fixed atoms of the surface slab in the adsorption model during the PHONON calculation.
the input file are as follows,
WMC-1.0
&INPUTPH
outdir='/fs08/home/js_wjliu/espresso-6.1/qe-6.1/tempdir/WMC-1.0-half-gamma/' ,
prefix='WMC-1.0-half-gamma',
fildyn='WMC-1.0-half-gamma.dynG',
nat_todo=3
nogg = .true.,
alpha_mix(1) = 0.1,
/
0.0 0.0 0.0
49 50 51
So we think only the frequency 145-153 corresponds to atom 49-51 would be reported.
However, we find the freq 1-9, which are 9 IMAGINARY frequencies also reported by PHONON.
Here are some information extracted from output file.
Mode symmetry, C_1 (1) point group:
Atomic displacements:
There are 153 irreducible representations
Representation 1 1 modes -A Not done in this run
Representation 2 1 modes -A Not done in this run
Representation 3 1 modes -A Not done in this run
Representation 4 1 modes -A Not done in this run
Representation 5 1 modes -A Not done in this run
Representation 6 1 modes -A Not done in this run
Representation 7 1 modes -A Not done in this run
Representation 8 1 modes -A Not done in this run
Representation 9 1 modes -A Not done in this run
Representation 10 1 modes -A Not done in this run
Representation 144 1 modes -A Not done in this run
Representation 145 1 modes -A To be done
Representation 146 1 modes -A To be done
Representation 147 1 modes -A To be done
Representation 148 1 modes -A To be done
Representation 149 1 modes -A To be done
Representation 150 1 modes -A To be done
Representation 151 1 modes -A To be done
Representation 152 1 modes -A To be done
Representation 153 1 modes -A To be done
Compute atoms: 49, 50, 51,
Alpha used in Ewald sum = 2.8000
negative rho (up, down): 9.406E-05 3.627E-03
PHONON : 1h22m CPU 22h 1m WALL
Mode symmetry, C_1 (1) point group:
freq ( 1 - 1) = -1086.5 [cm-1] --> A I+R
freq ( 2 - 2) = -815.1 [cm-1] --> A I+R
freq ( 3 - 3) = -764.6 [cm-1] --> A I+R
freq ( 4 - 4) = -458.8 [cm-1] --> A I+R
freq ( 5 - 5) = -240.8 [cm-1] --> A I+R
freq ( 6 - 6) = -206.1 [cm-1] --> A I+R
freq ( 7 - 7) = -127.7 [cm-1] --> A I+R
freq ( 8 - 8) = -59.4 [cm-1] --> A I+R
freq ( 9 - 9) = -21.3 [cm-1] --> A I+R
freq (145 -145) = 255.2 [cm-1] --> A I+R
freq (146 -146) = 438.0 [cm-1] --> A I+R
freq (147 -147) = 507.2 [cm-1] --> A I+R
freq (148 -148) = 681.1 [cm-1] --> A I+R
freq (149 -149) = 810.3 [cm-1] --> A I+R
freq (150 -150) = 1124.5 [cm-1] --> A I+R
freq (151 -151) = 1568.3 [cm-1] --> A I+R
freq (152 -152) = 3534.8 [cm-1] --> A I+R
freq (153 -153) = 3559.3 [cm-1] --> A I+R
We also find although we input a unstable adsorption configuration for atom 49-51, there is no imaginary frequency reported in freq 145-153.
Could anyone help us to deal with this problem. Thanks in advance.
best wishes
vega
------------------
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vega
Department of physics, Nanjing University, China
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