[QE-users] [EXT] Environ Bands Not Converging
Lance Kavalsky
lance.kavalsky at mail.utoronto.ca
Mon Nov 12 22:42:20 CET 2018
Hi Francesco,
Thank you. Running relax instead of vc-relax resolved the issue for relaxation.
Best,
Lance Kavalsky
University of Toronto
________________________________
From: users <users-bounces at lists.quantum-espresso.org> on behalf of Francesco Nattino <francesco.nattino at epfl.ch>
Sent: Monday, November 5, 2018 1:13:33 PM
To: users at lists.quantum-espresso.org
Subject: Re: [QE-users] [EXT] Environ Bands Not Converging
Dear Lance,
the problem might arise from the fact that you are performing a vc-relax calculation. Note that solvation contributions to the stress are not implemented, so Environ is not expected to run with variable cells. You may try to relax the system at constant volume (calculation = relax).
Francesco Nattino
EPFL
On 11/3/18 21:13, Lance Kavalsky wrote:
Dear Professor Andreussi,
Thank you so much for your detailed response! I changed continuum interface to using the soft sphere approach and it appears to have resolved the scf convergence issue.
It was able to complete a full scf cycle on the initial structure, but before starting the second cycle it crashes now giving an error of:
%%%%%%%%%%%%%%%%%%%%%%%%%%% task # 5 from update_environ_charges : error # 1 Inconsistent integral of total charge %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Interestingly, setting env_static_permittivity=1.0 in environ.in and removing assume_isolated = 'slabz' did not reproduce this error, and the calculation was able to completely finish. I also noticed in the output file just before the crash, it has the line "extrapolated charge 131.09828, renormalised to 131.00000" and I'm wondering if this may be related. I would very much appreciate any additional suggestions to address this new error.
Best,
Lance Kavalsky
University of Toronto
________________________________
From: users <users-bounces at lists.quantum-espresso.org><mailto:users-bounces at lists.quantum-espresso.org> on behalf of Andreussi, Oliviero <Oliviero.Andreussi at unt.edu><mailto:Oliviero.Andreussi at unt.edu>
Sent: Thursday, November 1, 2018 6:46 PM
To: Quantum Espresso users Forum
Subject: Re: [QE-users] [EXT] Environ Bands Not Converging
Hi,
Thanks for reporting the problem. I am not sure of its source, but the defaults of Environ should be good enough for simple systems like yours and if you tested different numerical parameters without success this would suggest me that there is a physical reason why the calculation is not converging. My main guess is that the problem resides with the lithium ion. Have you tested the calculation without lithium? Have you tried the calculation with lithium and without the solvent? What pseudo potential are you using for lithium (does the lithium ion have just one valence electron or does it also have its core electrons)?
If lithium has only its valence electron and loses it to the substrate, this is probably going to be a problem for SCCS. In SCCS the continuum boundary is defined on the electronic density, so it means that the continuum goes on top of the lithium ion. To avoid this you could either use full potential for lithium or use an alternative approach for the continuum interface, namely the soft-sphere solvation approach (Fisicaro et al. JCTC 2017). To use the latter you can just specify solvent_mode = ‘ionic’. In this case, you may want to check that the soft-sphere radius for lithium is reasonable.
Hope this helps.
Best,
Oliviero Andreussi
--
Assistant Professor
Department of Physics
University of North Texas
Email: oliviero.andreussi at unt.edu<mailto:oliviero.andreussi at unt.edu>
Phone: +1-(940)-369-5316
Skype: olivieroandreussi
Web: https://sites.google.com/site/olivieroandreussi
On Nov 1, 2018, at 5:28 PM, Lance Kavalsky <lance.kavalsky at mail.utoronto.ca<mailto:lance.kavalsky at mail.utoronto.ca>> wrote:
Hello all,
I am currently trying to use Environ and am experiencing difficulty. When running vc-relax I am receiving the error "bands not converged". This is despite changing the environ_thr, tol, solvent_mode, conv_thr, diagonalization, and mixing_mode. I have yet to see it complete a single full scf cycle, and watching the estimated scf accuracy it will periodically explode hitting values as large as 1700 Ry before finally giving the error message.
Any additional suggestions would be very much appreciated. Both the pw.x and environ.in files have been pasted below. I am using QE 6.2.1 and Environ 1.0.
Thanks,
Lance Kavalsky
University of Toronto
&control
disk_io='high'
tprnfor = .TRUE.
restart_mode = 'from_scratch',
prefix = 'all',
calculation ='vc-relax',
outdir = './all',
Pseudo_dir = '~/qe_pseudo'
nstep = 1000000
/
&system
assume_isolated = 'slabz'
ibrav=0,
nat=33,
nbnd=120
nosym= .TRUE
ntyp=2,
ecutwfc=60,
degauss=0.02,
occupations='smearing'
smearing='mp'
vdw_corr='grimme-d2',
/
&electrons
mixing_mode='local-TF',
mixing_beta=0.2,
electron_maxstep=200,
conv_thr = 1.D-5
/
&ions
/
&cell
/
CELL_PARAMETERS
18.638982356 0.000000000 0.000000000
-9.319491169 16.141832210 0.000000000
0.000000000 0.000000000 43.442244346
ATOMIC_SPECIES
C 12.0107 C.pbe-n-kjpaw_psl.0.1.UPF
Li 6.94 Li.pbe-s-kjpaw_psl.0.2.1.UPF
ATOMIC_POSITIONS angstrom
Li 2.465903098 2.847312956 7.998767559
C -0.001222067 -0.002150713 5.748168621
C -0.006894107 1.419668805 5.748711907
C -1.235385692 2.135486140 5.748168054
C -1.235385692 3.559103273 5.748168054
C -2.465827629 4.271813207 5.747820607
C -2.465827488 5.694593503 5.747451858
C -3.697991730 6.405978452 5.747822309
C -3.699995777 7.827928911 5.748170451
C 2.465832575 -0.007964030 5.748711231
C 2.465830973 1.415317747 5.733405805
C 1.225702627 2.131306376 5.733413904
C 1.225702627 3.563283037 5.733413904
C -0.006894107 4.274920608 5.748711907
C -0.001222067 5.696740126 5.748168621
C -1.233668925 6.405976111 5.747821630
C -1.231667255 7.827928014 5.748169206
C 4.932884056 -0.002150957 5.748168156
C 4.938555745 1.419665120 5.748705064
C 3.705961632 2.131305141 5.733395741
C 3.705961632 3.563284272 5.733395741
C 2.465830973 4.279271666 5.733405805
C 2.465832575 5.702553443 5.748711231
C 1.231662375 6.408544130 5.748170451
C 1.233666422 7.830494589 5.747822309
C 7.397488816 -0.000004090 5.747451858
C 7.397488675 1.422776206 5.747820607
C 6.167048845 2.135488891 5.748165854
C 6.167048845 3.559100522 5.748165854
C 4.938555745 4.274924293 5.748705064
C 4.932884056 5.696740370 5.748168156
C 3.699990897 6.408545027 5.748169206
C 3.697989227 7.830496930 5.747821630
K_POINTS automatic
4 4 1 0 0 0
environ.in
&ENVIRON
environ_type='input',
env_static_permittivity=7.58
environ_thr=5.0
/
&BOUNDARY
solvent_mode='full'
/
&ELECTROSTATIC
pbc_correction = 'parabolic'
pbc_dim = 2
pbc_axis = 3
tol = 1.D-13
/
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