[Pw_forum] ENVIRON vs COSMO solvation models
Oliviero Andreussi
oliviero.andreussi at usi.ch
Wed Mar 9 10:49:52 CET 2016
Hi Giuseppe,
You can play with the same two parameters in Environ as well, you just
need to set env_static_permittivity (and env_optical_permittivity for
TDDFT) to the ones of the medium you want to simulate. This is assuming
that you are only interested in the electrostatic interaction with the
solvent and that the shape of the cavity, i.e. how close to the solute
you get the continuum solvent, does not depend on the kind of solvent.
Both these assumptions are implicit in your analogy with COSMO (which by
the way is a less refined continuum model than the standard PCM or than
the SCCS model of Environ), but they may be crude depending in the
system/property you want to study. In particular, I am quite sure that
standard PCM uses a different scaling of the size of the cavity for
different solvents.
Clearly, if you are only interested in studying the effects of a
different dielectric constant of the environment on your embedded
quantum-mechanical system (e.g. as was done in Fortunelli et al. Angew.
Chem. Int. Ed. 126, 6787 (2014) doi:10.1002/ange.201403264) you can do
it very easily with the parameters above. Instead of using one of the
preset solvent setups (environ_type =
vacuum/water/water-cation/water-anion), you specify in input only the
dielectric constant that you want to use, env_static_permittivity = XXX,
and use the defaults for all the other parameters (which corresponds to
no contribution from non-electrostatic terms, env_pressure = 0.D0,
env_surface_tension = 0.D0, and to a shape of the cavity equal to the
one optimized for water, rhomax = 0.005, rhomin = 0.0001).
Otherwise, if you have to study a well defined solvent and want to be
more accurate, you would need to redo the parametrization of the model
for the new solvent, which for Environ only requires to tune 3 (or 4)
parameters (rhomax and rhomin, which controls the shape of the cavity,
env_static_permittivity and env_pressure, which are used to model non
electrostatic effects in a simplified way). Ideally you want to tune
these parameters to reproduce experimental solvation free energies of a
reasonable range of solutes in the new solvent (a good database of
experimental data is from the group of Truhlar
http://comp.chem.umn.edu/mnsol/ ).
Since I am trying to improve on the documentation of the module, which
probably is not clear enough, can I ask you which documentation have you
been studying? The website (www.quantum-environ.org), the input keywords
(as in the Environ/Doc/ directory or from the website
http://nebula.wsimg.com/c3d04ee804fb1a1ddb5402d80b7c8194?AccessKeyId=ECF106C2B7F0B5C40F7B&disposition=0&alloworigin=1
), the references? If you have more doubts on setting up the input or on
the implemented models, please don't hesitate to write to the forum or
to contact me directly.
Regards,
Oliviero Andreussi
--
Senior Postdoctoral Researcher
École Polytechnique Fédérale de Lausanne (EPFL) and
Università della Svizzera Italiana (USI) of Lugano
USI Campus, Via G. Buffi 17, 6904 Lugano, Switzerland
Emails: oliviero.andreussi @ epfl.ch -or- usi.ch
Tel: +41-(0)58-666-4810 / Skype: olivieroandreussi
Web: https://sites.google.com/site/olivieroandreussi
On 03/08/2016 12:51 PM, Giuseppe Mattioli wrote:
> Dear All
> I was studying the documentation of the ENVIRON 0.2 plugin and it seems that water only is coded as solvent for isolated molecules. I was wondering
> whether there is somewhere a subset of variables (which I was not able to found...) that setup alternative dielectric media as in the case of the
> COSMO model (cited in the ENVIRON documentation), which basically requires the solvent dielectric constant (ground state DFT) or dielectric
> constant+refractive index (TDDFT) only.
> Thank you in advance
> Giuseppe
>
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> Giuseppe Mattioli
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