[Pw_forum] Fwd: error message while DFT+U calculation
Pallavi Bothra
pallavi.bothra43 at gmail.com
Tue Jan 6 19:54:57 CET 2015
Dear all,
I am getting the following errors while optimising Co3O4 :
In one machine (128 core):
rank 53 in job 1 node28_53016 caused collective abort of all ranks
exit status of rank 53: killed by signal 9
rank 53 in job 1 node28_53016 caused collective abort of all ranks
exit status of rank 53: killed by signal 9
In another machine (64 core):
exe: Rank 0:12: MPI_Allreduce: Message truncated
exe: Rank 0:24: MPI_Allreduce: Message truncated
exe: Rank 0:4: MPI_Allreduce: Message truncated
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
libmpi.so.1 00002B75B41AD23A Unknown Unknown Unknown
srun: error: n33: task12: Exited with exit code 14
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
libmpi.so.1 00002AFE1337523A Unknown Unknown Unknown
srun: Job Failed
This is my input file:&CONTROL
calculation = 'relax' ,
restart_mode = 'from_scratch' ,
prefix = 'Co3O4_A_mag_dipole' ,
outdir = './temp_Co3O4_A_mag_dipole_U_2' ,
pseudo_dir = '/sfs3/home/pallavi/pseudo' ,
nstep = 1000
tefield = .true.
dipfield = .true.
wf_collect = .true.
disk_io = 'low'
/
&SYSTEM
ibrav = 0
celldm(1) = 1.8903591
nat = 54,
ntyp = 3,
ecutwfc = 35 ,
ecutrho = 350 ,
occupations = 'smearing' ,
degauss = 0.01 ,
smearing = 'marzari-vanderbilt' ,
nspin = 2
starting_magnetization(1) = 0.5
starting_magnetization(2) = -0.5
lda_plus_u = .true.
lda_plus_u_kind = 0.0D
Hubbard_U(1) = 5.9
Hubbard_U(2) = 5.9
U_projection_type = 'atomic'
nbnd = 250
edir = 3
emaxpos = 0.70
eopreg = 0.1
eamp = 0.0D
/
&ELECTRONS
electron_maxstep = 500
conv_thr = 1.D-5
mixing_mode = 'plain'
mixing_beta = 0.1
/
&ION
upscale = 100
/
ATOMIC_SPECIES
Co1 58.9332 Co.pbe-nd-rrkjus.UPF
Co2 58.9332 Co.pbe-nd-rrkjus.UPF
O 15.9994 O.pbe-rrkjus.UPF
ATOMIC_POSITIONS angstrom
Co1 0.766881450 -0.000719600 0.191954494
Co1 1.070544195 -0.000721188 5.845163997
Co1 5.214059988 2.891328216 8.598548880
Co1 5.026636594 2.891459731 2.859613191
Co1 3.056228206 2.891356682 5.845809385
Co1 7.184741091 -0.000610315 2.861542585
Co1 6.989362509 -0.000716525 8.599193558
Co1 3.367072046 2.891381189 0.193028561
Co2 4.071351601 -0.000648264 4.300753317
Co2 3.978784137 -0.000708191 10.076689789
Co2 0.056860268 2.891408199 1.217360996
Co2 0.049857596 2.891309367 7.262107970
Co2 0.141576492 2.891347809 10.074856270
Co2 4.075786233 -0.000652997 1.217894793
Co2 4.075430630 -0.000756325 7.262985577
Co1 2.065333719 4.337491005 2.852927536
Co1 6.103325550 1.445302279 5.722710014
Co1 6.103323794 4.337335504 5.722715243
Co1 2.065353819 1.445501089 2.852925431
Co1 2.061627926 4.337291039 8.898271336
Co2 0.057148936 2.891422339 4.300330412
Co1 6.106983036 1.445036039 -0.005310382
Co1 2.061614380 1.445274355 8.898280291
Co1 6.107010102 4.337721550 -0.005316066
O 2.113360384 -0.000629662 1.492751875
O 2.156825272 -0.000807256 7.487133875
O 6.163599176 2.891321985 4.435086220
O 6.161481836 2.891365178 1.346428796
O 2.107845905 -0.000573285 4.192356939
O 2.155602841 -0.000805557 10.180481430
O 4.314739946 1.367827593 8.862360599
O 8.040041066 4.261051501 5.769184823
O 3.969694557 1.334788952 2.825077352
O 8.040034971 1.521599145 5.769144351
O 4.314771815 4.414827199 8.862415146
O 1.968494047 2.891281204 7.486978412
O 6.044694752 -0.000733067 4.435275309
O 6.051784876 -0.000697288 1.347243172
O 6.027389571 -0.000754260 6.999803668
O 2.020796281 2.891555767 4.192420978
O 1.964969166 2.891285198 10.180419192
O 0.161171333 1.556272289 2.824917886
O 4.259998151 4.423683062 -0.178526568
O -0.189553086 1.522287397 8.859773885
O 4.259961582 1.359052359 -0.178554899
O 0.161164446 4.226664225 2.824934335
O 2.018957009 2.891507734 1.492767964
O 4.166613897 4.413664075 5.769806402
O -0.189703892 4.260332563 8.859797066
O 4.166590767 1.369004036 5.769828856
O 6.177962870 2.891286125 6.999880416
O 7.954009032 4.251127250 -0.178988002
O 3.969676356 4.448133985 2.825068328
O 7.953980778 1.531548562 -0.178937042
K_POINTS automatic
4 4 1 0 0 0
CELL_PARAMETERS angstrom
8.07730000 0.00000000 0.00000000
0.00000000 5.78220000 0.00000000
0.00000000 0.00000000 25.70780000
Thanks in advance
Regards
Pallavi Bothra
JNCASR, Bangalore
India
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