[Pw_forum] MPI error when trying to run NEB v.5.2.0
Abhishek Bagusetty
abb58 at pitt.edu
Tue Aug 25 17:22:12 CEST 2015
Hi All,
I am kind of struggling with NEB calculations and relatively new to the
code. It would be really helpful, if someone can help with any pointers to
get this fixed. I am trying to perform a calculation which involves a
"very" low barrier and an tricky pathway. Hence the tighter convergence
criterion. The objective of the calculation is to perform a CI-NEB
calculation on "13 images interpolated between initial and final state". I
have provided a pseudo-input file that might be helpful.
The calculation terminates with the following error from MPI crashing.
Started the execution with the following prompt :
mpirun -np 60 neb.x -nimage 4 -inp $IN > $OUT
Thanks for any help !
########## OUTPUT ##########
Program NEB v.5.2.0 starts on 25Aug2015 at 10:54:53
This program is part of the open-source Quantum ESPRESSO suite
for quantum simulation of materials; please cite
"P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009);
URL http://www.quantum-espresso.org",
in publications or presentations arising from this work. More details
at
http://www.quantum-espresso.org/quote
Parallel version (MPI), running on 60 processors
path-images division: nimage = 4
R & G space division: proc/nbgrp/npool/nimage = 15
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
--------------------------------------------------------------------------
mpirun detected that one or more processes exited with non-zero status,
thus causing
the job to be terminated. The first process to do so was:
Process name: [[40355,1],58]
Exit code: 29
--------------------------------------------------------------------------
########## INPUT ##########
BEGIN
BEGIN_PATH_INPUT
&PATH
string_method = 'neb',
restart_mode = 'from_scratch',
nstep_path = '2000',
num_of_images = 15,
opt_scheme = 'broyden',
CI_scheme = 'manual',
first_last_op t= .false.,
ds = 0.75D0, ! optimization step size used by Broyden
path_thr = 0.05D0, ! Force threshhold for NEB ev/AA
/
CLIMBING_IMAGES
2,3,4,5,6,7,8,9,10,11,12,13,14
END PATH_INPUT
BEGIN_ENGINE_INPUT
&CONTROL
verbosity = 'low',
nstep = 5000,
restart_mode = 'from_scratch',
pseudo_dir = 'PATH_TO_PP',
outdir = './',
prefix = 'CINEB_NODCC',
tprnfor = .true.,
etot_conv_thr= 1.0D-6,
forc_conv_thr= 1.0D-4,
/
&SYSTEM
ibrav = 0,
tot_charge= +1, ! total chg on the system
nat = 53,
ntyp = 3,
ecutwfc = 30.0, ! kinetic energy cutoff (Ry) for wavefunctions
ecutrho = 360.0, ! kinetic energy cutoff (Ry) for charge density
/
&ELECTRONS
conv_thr = 1.0D-9, ! convergence threashold on total energy
/
&IONS
/
ATOMIC_SPECIES
C 12.0107 C.pbe-rrkjus.UPF
O 15.9994 O.pbe-rrkjus.UPF
H 1.00794 H.pbe-rrkjus.UPF
K_POINTS {automatic}
3 3 1 0 0 0
CELL_PARAMETERS {angstrom}
a1 a2 a3
b1 b2 b3
c1 c2 c3
BEGIN_POSITIONS
FIRST_IMAGE
ATOMIC_POSITIONS {angstrom}
.......
INTERMEDIATE_IMAGE
ATOMIC_POSITIONS {angstrom}
....
...
..
LAST_IMAGE
ATOMIC_POSITIONS {angstrom}
......
END_POSITIONS
END_ENGINE_INPUT
END
Abhishek
-----------------------------------------------------------------------------------------------------------
Abhishek Bagusetty
PhD Student, Computational Modeling & Simulation
Center for Simulation and Modeling
Department of Chemical & Petroleum Engineering
University of Pittsburgh
Pittsburgh, PA - 15261
Office : 920 Benedum Hall
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