[Pw_forum] Cannot relax guanine molecule
Wudmir Rojas
wudmir at gmail.com
Fri Jun 27 03:20:21 CEST 2014
Dear P. Giannozzi,
Finally I could have a properly relaxation of Guanine. The problem were the
PPs. I changed the previous to pbe-van_ak.UPF type and it works.
Thank you,
Wudmir
On 26 June 2014 21:48, Paolo Giannozzi <paolo.giannozzi at uniud.it> wrote:
> On Thu, 2014-06-26 at 17:43 +0100, Wudmir Rojas wrote:
>
> > ecutwfc = 25.0,
>
> too small for those pseudopotentials, try no less than 50
>
> > ecutrho = 200.0,
>
> for norm-conserving PP, ecutrho=4*ecutwfc (default if not specified)
>
> > celldm(1) = 18.897259886
>
> > CELL_PARAMETERS (alat)
> > 8.000 0.000 0.00
> > 0.000 8.000 0.00
> > 0.000 0.000 8.00
>
> Most creative way to specify a cubic box of 80 A side ever.
> 8 A is sufficient for most purposes and runs on a laptop
>
> P.
> >
> >
> > ATOMIC_POSITIONS (angstrom)
> >
> > N 0 0 0
> >
> > C 0 0 1.440908
> >
> > C 1.357081 0 1.91969
> >
> > C 2.396462 0 0.987468
> >
> > N 2.338369 0 -0.36805
> >
> > C 1.102405 0 -0.817435
> >
> > N 0.886377 0 -2.16208
> >
> > N 1.849196 0 3.211795
> >
> > C 3.148326 0 3.067635
> >
> > N 3.542068 0 1.739303
> >
> > H -0.032303 0 -2.567841
> >
> > H 1.694052 0 -2.761628
> >
> > H -0.932932 0 -0.393625
> >
> > O -1.065793 0 2.031419
> >
> > H 3.871687 0 3.871397
> >
> > H 4.482237 0 1.373635
> >
> >
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>
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