[Pw_forum] problems with running Quantum Espresso in parallel
torstein.fjermestad at unito.it
torstein.fjermestad at unito.it
Thu Apr 17 12:41:50 CEST 2014
Dear all,
I recently installed QE on a virtual cluster configured with
StarCluster.
QE configures and compiles without errors. However, when I submit a
parallel calculation on 16 processors, the following is written near the
start of the output file:
Parallel version (MPI), running on 1 processors
The line is repeated 16 times in the output. To me it seems like I am
actually running 16 single processor calculations that all write to the
same output file (stdout in this case).
The way I submit this calculation, is the following:
I write the following submit script (submit.sh):
cp /path/to/executable/pw.x
mpirun -np 16 pw.x -in input.inp
Then I submit the job with the following command:
qsub -cwd -pe orte 16 ./submit.sh
The queuing system of StarCluster is Open Grid Scheduler.
For the line in the submit script, I have also tried several
alternatives such as:
mpirun pw.x -in input.inp
mpirun pw.x -inp input.inp
mpirun -np 16 pw.x -inp input.inp
mpirun -np 16 pw.x < input.inp
In the archives of this mailing list I have seen some similar problems,
but in spite of this I was still not able to solve my problem.
I would appreciate very much if someone could give me suggestions on
how to solve the problem.
Thanks in advance.
Yours sincerely,
Torstein Fjermestad
University of Turin,
Italy
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