[Pw_forum] example09 segfault - ramtns used but not allocated in dynmatrix.f90

Goranka Bilalbegovic gbilalbegovic at gmail.com
Wed Jan 11 13:23:42 CET 2012


On Mon, Dec 12, 2011 at 11:49 AM, Paolo Giannozzi <giannozz at democritos.it>wrote:

> On Mon, 2011-12-12 at 10:02 +0100, Jean-Roch Huntzinger wrote:
>
> > The attached patch solves a segfault in example09
> > [...] Should I file a bug report ?
>
> too late: it was fixed a few days ago. Thank you anyway!
>
> http://qe-forge.org/scm/viewvc.php?view=rev&root=q-e&sortby=date&revision=8244
>
>
Hello,

I have applied this correction in:
http://qe-forge.org/scm/viewvc.php?view=rev&root=q-e&sortby=date&revision=8244
I  also replaced the  routine set_asr in dynmat.f90 (attached in:
http://www.democritos.it/pipermail/pw_forum/2011-December/022706.html)

However, the CH4 part of example 9 from 4.3.2, compiled with ifort 11.1, on
the Linux cluster, still does not work (both with asr ='simple' and
'zero-dim').

Error is:
----------
0 - MPI_BARRIER : Null communicator
Exit code -3 signaled from (host)
Killing remote processes...[0] [] Aborting Program!
Abort signaled by rank 0:  Aborting program !
forrtl: error (69): process interrupted (SIGINT)
Image              PC                Routine            Line        Source

libpthread.so.0    00002ADEFF3158FB  Unknown               Unknown  Unknown
libmpich.so.1.0    00002ADEFEA615A0  Unknown               Unknown  Unknown
libmpich.so.1.0    00002ADEFEA60E36  Unknown               Unknown  Unknown
libmpich.so.1.0    00002ADEFEA56371  Unknown               Unknown  Unknown
libmpich.so.1.0    00002ADEFEA55B40  Unknown               Unknown  Unknown
libmpich.so.1.0    00002ADEFEA55718  Unknown               Unknown  Unknown
libmpich.so.1.0    00002ADEFEA10AE4  Unknown               Unknown  Unknown
libmpich.so.1.0    00002ADEFEA109DC  Unknown               Unknown  Unknown
dynmat.x           000000000042E993  mp_synchronize_            37
 mp_base.f90
dynmat.x           000000000042EA12  bcast_integer_            112
 mp_base.f90
dynmat.x           000000000041B307  mp_mp_mp_bcast_i1         295  mp.f90
dynmat.x           0000000000415BC5  io_dyn_mat_mp_rea         259
 io_dyn_mat.f90
dynmat.x           0000000000407691  MAIN__                    129
 dynmat.f90
dynmat.x           0000000000406A0C  Unknown               Unknown  Unknown
libc.so.6          00002ADEFF9CD994  Unknown               Unknown  Unknown
dynmat.x           0000000000406919  Unknown               Unknown  Unknown
MPI process terminated unexpectedly
error: executing task of job 220258 failed: execution daemon on host ...
didn't accept task
DONE
----------------

In *.out there is only:   Reading Dynamical Matrix from file ch4.dyn.xml
Therefore it stops before writing:  Acoustic Sum Rule: || Z*(ASR) -
Z*(orig)|| = ...

Thank you for any help.
-- 
Goranka Bilalbegovic,
Department of Physics, Faculty of Science,
University of Zagreb, Croatia
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