[Pw_forum] compilation problem

[Axel Kohlmeyer]

On Thu, Nov 24, 2011 at 9:31 PM, DONG Rui <rdong at ncsu.edu> wrote:
> Hi all
>
> I was compiling espresso on a Redhat machine, with PBS and mpi-intel
> library,
>
> it seems I can't use the flag "--disable-shared", once I do so,  I got the
> following in make.sys
> DFLAGS         =  -D__INTEL -D__FFTW3
> there is no "-D__MPI -D__PARA", and if I add these two by hand in make.sys,
> it complained with error.
>
> If I did simply "./configure" in espresso top directory, then change the
> BLAS/LAPACK library to internal by hand,
> I got the following error in running.(compilation is successful.)
>
> /home/***/pw.x: symbol lookup error:
> /opt/openmpi/1.4.3/intel/lib/libopen-pal.so.0: undefined symbol:
> __intel_sse2_strcpy
> /home/***/pw.x: symbol lookup error:
> /opt/openmpi/1.4.3/intel/lib/libopen-pal.so.0: undefined symbol:
> __intel_sse2_strcpy
> /home/***/pw.x: symbol lookup error:
> /opt/openmpi/1.4.3/intel/lib/libopen-pal.so.0: undefined symbol:
> __intel_sse2_strcpy
> /home/***/pw.x: symbol lookup error:
> /opt/openmpi/1.4.3/intel/lib/libopen-pal.so.0: undefined symbol:
> __intel_sse2_strcpy

this is an error caused by the local OpenMPI installation.
you need to contact the genius that set this up.

axel.

> and I think I already source all the necessary lib in the batch script like
> the below:
>
> #PBS -l nodes=1:ppn=4
> #PBS -l walltime=00:01:00
> source /opt/intel/Compiler/11.1/072/bin/ifortvars.sh intel64
> source /opt/intel/fce/10.1.012/bin/ifortvars.sh
> source /opt/intel/cce/10.1.012/bin/iccvars.sh
> #source /opt/openmpi/1.4.3/intel/bin/
> export
> LD_LIBRARY_PATH=/opt/intel/Compiler/11.1/072/mkl/lib/em64t:/opt/openmpi/1.4.3/intel/lib:/opt/intel/fce/10.1.012/lib:/opt/pbs/lib64
>
> Does anyone have any idea of what is going on here?
>
> Thank you all for reading this!
>
> --
> Sincerely,
>
> Rui DONG
>
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>
>



-- 
Dr. Axel Kohlmeyer
akohlmey at gmail.com  http://goo.gl/1wk0

College of Science and Technology
Temple University, Philadelphia PA, USA.