[Pw_forum] QE: install problem, 4.2.1
ac.rain at inbox.com
ac.rain at inbox.com
Tue Nov 9 08:19:37 CET 2010
Hi all,
I am having some troubles getting Quantum Espresso to build on a Linux system (CentOS 5.5) x86_64. my current issue is getting passed the iotk error...
export CC=gcc
export MPIF90=mpf90
export PATH=/usr/local/mpich2-install/bin:$PATH
(to make sure mpf90 location is in the $PATH, mpich2 was compiled with gfortran support!)
export F90=gfortran
after ./configure ,the "make all" output is shown below...
# make all
test -d bin || mkdir bin
if test -e extlibs/archive/iotk-1.1.beta.tar.gz ; then \
( cd extlibs ; make libiotk) ; fi
make[1]: Entering directory `/home/user/espresso-4.2.1/extlibs'
if test ! -d ../S3DE; then \
(gzip -dc archive/iotk-1.1.beta.tar.gz | (cd ../; tar -xvf -)) ; \
if test -e install/Makefile_iotk; then \
(cp install/Makefile_iotk ../S3DE/iotk/src/Makefile); fi; \
if test -e install/iotk_config.h; then \
(cp install/iotk_config.h ../S3DE/iotk/include/iotk_config.h); fi; fi
cd ../S3DE/iotk/src; make lib+util;
make[2]: Entering directory `/home/user/espresso-4.2.1/S3DE/iotk/src'
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_base.f90
make[2]: O3: Command not found
make[2]: [iotk_base.o] Error 127 (ignored)
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_attr_interf.f90
make[2]: O3: Command not found
make[2]: [iotk_attr_interf.o] Error 127 (ignored)
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_error_interf.f90
make[2]: O3: Command not found
make[2]: [iotk_error_interf.o] Error 127 (ignored)
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_misc_interf.f90
make[2]: O3: Command not found
make[2]: [iotk_misc_interf.o] Error 127 (ignored)
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_str_interf.f90
make[2]: O3: Command not found
make[2]: [iotk_str_interf.o] Error 127 (ignored)
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_attr+CHARACTER1_0.f90
make[2]: O3: Command not found
make[2]: [iotk_attr+CHARACTER1_0.o] Error 127 (ignored)
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_fmt_interf.f90
make[2]: O3: Command not found
make[2]: [iotk_fmt_interf.o] Error 127 (ignored)
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_xtox_interf.f90
make[2]: O3: Command not found
make[2]: [iotk_xtox_interf.o] Error 127 (ignored)
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_attr+COMPLEX1_0.f90
make[2]: O3: Command not found
make[2]: [iotk_attr+COMPLEX1_0.o] Error 127 (ignored)
....I omitted 2 pages of errors here that look very similar to the above and below lines....
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_unit_list.f90
make[2]: O3: Command not found
make[2]: [iotk_unit_list.o] Error 127 (ignored)
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_unit.f90
make[2]: O3: Command not found
make[2]: [iotk_unit.o] Error 127 (ignored)
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_write.f90
make[2]: O3: Command not found
make[2]: [iotk_write.o] Error 127 (ignored)
O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW -I../include -c iotk_xtox.f90
make[2]: O3: Command not found
make[2]: [iotk_xtox.o] Error 127 (ignored)
ar ruv libiotk.a iotk_attr+CHARACTER1_0.o iotk_attr+COMPLEX1_0.o iotk_attr+COMPLEX1_3.o iotk_attr+COMPLEX1_6.o iotk_attr+COMPLEX2_0.o iotk_attr+COMPLEX2_3.o iotk_attr+COMPLEX2_6.o iotk_attr+COMPLEX3_0.o iotk_attr+COMPLEX3_3.o iotk_attr+COMPLEX3_6.o iotk_attr+COMPLEX4_0.o iotk_attr+COMPLEX4_3.o iotk_attr+COMPLEX4_6.o iotk_attr.o iotk_attr+INTEGER1_0.o iotk_attr+INTEGER1_3.o iotk_attr+INTEGER1_6.o iotk_attr+INTEGER2_0.o iotk_attr+INTEGER2_3.o iotk_attr+INTEGER2_6.o iotk_attr+INTEGER3_0.o iotk_attr+INTEGER3_3.o iotk_attr+INTEGER3_6.o iotk_attr+INTEGER4_0.o iotk_attr+INTEGER4_3.o iotk_attr+INTEGER4_6.o iotk_attr_interf.o iotk_attr+LOGICAL1_0.o iotk_attr+LOGICAL1_3.o iotk_attr+LOGICAL1_6.o iotk_attr+LOGICAL2_0.o iotk_attr+LOGICAL2_3.o iotk_attr+LOGICAL2_6.o iotk_attr+LOGICAL3_0.o iotk_attr+LOGICAL3_3.o iotk_attr+LOGICAL3_6.o iotk_attr+LOGICAL4_0.o iotk_attr+LOGICAL4_3.o iotk_attr+LOGICAL4_6.o iotk_attr+REAL1_0.o iotk_attr+REAL1_3.o iotk_attr+REAL1_6.o iotk_attr+REAL2_0.o iotk_attr+REAL2_3.o iotk_attr+REAL2_6.o iotk_attr+REAL3_0.o iotk_attr+REAL3_3.o iotk_attr+REAL3_6.o iotk_attr+REAL4_0.o iotk_attr+REAL4_3.o iotk_attr+REAL4_6.o iotk_base.o iotk_dat+CHARACTER1_0.o iotk_dat+CHARACTER1_3.o iotk_dat+CHARACTER1_6.o iotk_dat+COMPLEX1_0.o iotk_dat+COMPLEX1_3.o iotk_dat+COMPLEX1_6.o iotk_dat+COMPLEX2_0.o iotk_dat+COMPLEX2_3.o iotk_dat+COMPLEX2_6.o iotk_dat+COMPLEX3_0.o iotk_dat+COMPLEX3_3.o iotk_dat+COMPLEX3_6.o iotk_dat+COMPLEX4_0.o iotk_dat+COMPLEX4_3.o iotk_dat+COMPLEX4_6.o iotk_dat.o iotk_dat+INTEGER1_0.o iotk_dat+INTEGER1_3.o iotk_dat+INTEGER1_6.o iotk_dat+INTEGER2_0.o iotk_dat+INTEGER2_3.o iotk_dat+INTEGER2_6.o iotk_dat+INTEGER3_0.o iotk_dat+INTEGER3_3.o iotk_dat+INTEGER3_6.o iotk_dat+INTEGER4_0.o iotk_dat+INTEGER4_3.o iotk_dat+INTEGER4_6.o iotk_dat_interf.o iotk_dat+LOGICAL1_0.o iotk_dat+LOGICAL1_3.o iotk_dat+LOGICAL1_6.o iotk_dat+LOGICAL2_0.o iotk_dat+LOGICAL2_3.o iotk_dat+LOGICAL2_6.o iotk_dat+LOGICAL3_0.o iotk_dat+LOGICAL3_3.o iotk_dat+LOGICAL3_6.o iotk_dat+LOGICAL4_0.o iotk_dat+LOGICAL4_3.o iotk_dat+LOGICAL4_6.o iotk_dat+REAL1_0.o iotk_dat+REAL1_3.o iotk_dat+REAL1_6.o iotk_dat+REAL2_0.o iotk_dat+REAL2_3.o iotk_dat+REAL2_6.o iotk_dat+REAL3_0.o iotk_dat+REAL3_3.o iotk_dat+REAL3_6.o iotk_dat+REAL4_0.o iotk_dat+REAL4_3.o iotk_dat+REAL4_6.o iotk_error.o iotk_error_interf.o iotk_files.o iotk_files_interf.o iotk_fmt.o iotk_fmt_interf.o iotk_misc.o iotk_misc_interf.o iotk_module.o iotk_scan.o iotk_scan_interf.o iotk_stream.o iotk_stream_interf.o iotk_str.o iotk_str_interf.o iotk_tool.o iotk_tool_interf.o iotk_unit.o iotk_unit_interf.o iotk_unit_list.o iotk_write.o iotk_write_interf.o iotk_xtox.o iotk_xtox_interf.o
ar: creating libiotk.a
ar: iotk_attr+CHARACTER1_0.o: No such file or directory
make[2]: *** [libiotk.a] Error 1
make[2]: Leaving directory `/home/user/espresso-4.2.1/S3DE/iotk/src'
make[1]: *** [libiotk] Error 2
make[1]: Leaving directory `/home/user/espresso-4.2.1/extlibs'
make: *** [libiotk] Error 2
#
As you can see it passes -03 to the shell instead of the compiler, I have Fortran and Gcc people telling me the problem is application-specific. Any help is appreciated.
regards,
nick - Linux Administrator
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