[Pw_forum] stack smashing error
marc at fq.edu.uy
marc at fq.edu.uy
Fri May 15 15:58:22 CEST 2009
Hi Axel
Many thanks for your advice, regards.marc
> On Fri, 2009-05-15 at 09:36 -0300, marc at fq.edu.uy wrote:> Hello>
> hello marc,
>> I have installed a quantum espresso 4.1 CVS copy on my computer to do>
>> some test, but when I try to run the program it fails. Configuration
>> and> compilation runs fine, but even examples gives this error.
> that can mean two things:
> a) there is a problem with the compiler miscompiling new code that was
> added between since the 4.0.x version was branched off
> b) there is a bug in the code.
> both are equally probably. the cvs code is development code, so ittends to
> break every once in a while. and newly written code tends touse more
> fortran 95 features, which in turn can put a higher strainon compilers,
> particularly gfortran.
> i suggest you try compiling with reduced optimization and debuggingsymbols
> included and see if the error report persists and then producea proper
> stack trace to help trying to pinpoint the offending part ofthe code, so
> that somebody else can have a look at it and determinewho is to blame.
> cheers, axel.
>
>> Previously I have installed 4.0.4 version which run smoothly, with
>> examples.> System is ubuntu 8.10.> Many thanks> > Marc>
>> -------------------------------------------------------------> Marc E.
>> Segovia Becker, PhD,Ch.Eng> Computational Chemistry and Biology Group,
>> Detema> Facultad de Quimica> Universidad de la Republica> CC 1157A>
>> 11800 Montevideo> Uruguay> www.ccbg.fq.edu.uy>
>> --------------------------------------------------------------> >
>> Models are not reality.> > Nao se afobe nao, que nada é pra ja.
>> Chico> > If things seem under control, you're just not going fast
>> enough.Andretti> > Soy jardinero de mis dilemas.Drexler> > > ***
>> stack smashing detected ***: ./bin/pw.x terminated> ======= Backtrace:
>> =========> >
>> /lib/tls/i686/cmov/libc.so.6(__fortify_fail+0x48)[0xb79b66d8]> >
>> /lib/tls/i686/cmov/libc.so.6(__fortify_fail+0x0)[0xb79b6690]> >
>> ./bin/pw.x[0x823ce35]> > ./bin/pw.x[0x80af77c]> >
>> ./bin/pw.x[0x80b6e90]> > ./bin/pw.x[0x811379e]> >
>> ./bin/pw.x[0x81166b9]> > ./bin/pw.x[0x804ab94]> >
>> ./bin/pw.x[0x83724c9]> >
>> /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe5)[0xb78d2685]> >
>> ./bin/pw.x[0x804aa71]> > ======= Memory map: ========> >
>> 08048000-08392000 r-xp 00000000 08:01 1182544 >
>> /home/marc/espresso/PW/pw.x> > 08392000-08393000 r--p 00349000 08:01
>> 1182544 > /home/marc/espresso/PW/pw.x> > 08393000-0839b000 rw-p
>> 0034a000 08:01 1182544 > /home/marc/espresso/PW/pw.x> >
>> 0839b000-09262000 rw-p 0839b000 00:00 0> > 0a92b000-0a94c000 rw-p
>> 0a92b000 00:00 0 [heap]> > b78a1000-b78a3000 rw-p b78a1000
>> 00:00 0> > b78a3000-b78b8000 r-xp 00000000 08:02 1054> >
>> /lib/tls/i686/cmov/libpthread-2.8.90.so> > b78b8000-b78b9000 r--p
>> 00014000 08:02 1054> > /lib/tls/i686/cmov/libpthread-2.8.90.so> >
>> b78b9000-b78ba000 rw-p 00015000 08:02 1054> >
>> /lib/tls/i686/cmov/libpthread-2.8.90.so> > b78ba000-b78bc000 rw-p
>> b78ba000 00:00 0> > b78bc000-b7a14000 r-xp 00000000 08:02 1040> >
>> /lib/tls/i686/cmov/libc-2.8.90.so> > b7a14000-b7a16000 r--p 00158000
>> 08:02 1040> > /lib/tls/i686/cmov/libc-2.8.90.so> > b7a16000-b7a17000
>> rw-p 0015a000 08:02 1040> > /lib/tls/i686/cmov/libc-2.8.90.so> >
>> b7a17000-b7a1a000 rw-p b7a17000 00:00 0> > b7a1a000-b7a27000 r-xp
>> 00000000 08:02 500972 /lib/libgcc_s.so.1> > b7a27000-b7a28000 r--p
>> 0000c000 08:02 500972 /lib/libgcc_s.so.1> > b7a28000-b7a29000 rw-p
>> 0000d000 08:02 500972 /lib/libgcc_s.so.1> > b7a29000-b7a4d000 r-xp
>> 00000000 08:02 1044> > /lib/tls/i686/cmov/libm-2.8.90.so> >
>> b7a4d000-b7a4e000 r--p 00023000 08:02 1044> >
>> /lib/tls/i686/cmov/libm-2.8.90.so> > b7a4e000-b7a4f000 rw-p 00024000
>> 08:02 1044> > /lib/tls/i686/cmov/libm-2.8.90.so> > b7a4f000-b7b00000
>> r-xp 00000000 08:06 484923> > /usr/lib/libgfortran.so.3.0.0> >
>> b7b00000-b7b01000 r--p 000b0000 08:06 484923> >
>> /usr/lib/libgfortran.so.3.0.0> > b7b01000-b7b02000 rw-p 000b1000 08:06
>> 484923> > /usr/lib/libgfortran.so.3.0.0> > b7b02000-b7b04000 rw-p
>> b7b02000 00:00 0> > b7b04000-b7be4000 r-xp 00000000 08:06 488649
>> /usr/lib/libfftw3.so.3.1.2> > b7be4000-b7bea000 r--p 000df000 08:06
>> 488649 /usr/lib/libfftw3.so.3.1.2> > b7bea000-b7beb000 rw-p
>> 000e5000 08:06 488649 /usr/lib/libfftw3.so.3.1.2> >
>> b7beb000-b7f62000 r-xp 00000000 08:06 18442> >
>> /usr/lib/atlas/libblas.so.3gf.0> > b7f62000-b7f64000 r--p 00376000
>> 08:06 18442> > /usr/lib/atlas/libblas.so.3gf.0> > b7f64000-b7f67000
>> rw-p 00378000 08:06 18442> > /usr/lib/atlas/libblas.so.3gf.0> >
>> b7f7a000-b7f7c000 rw-p b7f7a000 00:00 0> > b7f7c000-b7f96000 r-xp
>> 00000000 08:02 501022 /lib/ld-2.8.90.so> > b7f96000-b7f97000 r-xp
>> b7f96000 00:00 0 [vdso]> > b7f97000-b7f98000 r--p 0001a000
>> 08:02 501022 /lib/ld-2.8.90.so> > b7f98000-b7f99000 rw-p 0001b000
>> 08:02 501022 /lib/ld-2.8.90.so> > bf984000-bf998000 rwxp bffeb000
>> 00:00 0 [stack]> > bf998000-bf999000 rw-p bffff000 00:00 0> >>
>> --> > > > > _______________________________________________> Pw_forum
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> --
> =======================================================================Axel
> Kohlmeyer akohlmey at cmm.chem.upenn.edu http://www.cmm.upenn.edu
> Center for Molecular Modeling -- University of PennsylvaniaDepartment
> of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323tel:
> 1-215-898-1582, fax: 1-215-573-6233, office-tel:
> 1-215-898-5425=======================================================================If
> you make something idiot-proof, the universe creates a better idiot.
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