[Pw_forum] How to set the ensemble when doing molecule
Axel Kohlmeyer
akohlmey at cmm.chem.upenn.edu
Tue Jun 9 04:34:55 CEST 2009
On Mon, Jun 8, 2009 at 9:53 PM, Lu Yunhao<phylyh at nus.edu.sg> wrote:
> If I set ion_temperature= 'not_controlled', the tempw is still used and
> meaningful?
yes. it will set the initial temperature.
> I attach part of my input file as follows. Is it right? By the way, I add
> electric field along Z direction.
if you add an electric field, you _don't_ do an NVE ensemble
by not controlling the temperature. the external field will create
energy, i.e. you'll have a non-equilibrium system.
>
> &CONTROL
> title = 'MD-contT' ,
> calculation = 'md' ,
> prefix='MD-contT',
> restart_mode = 'from_scratch' ,
> tefield=.true.,
> outdir = '/home/phylyh/Au_gr-check/MD-contT/tmp' ,
> pseudo_dir = '/home/phylyh/pseudo_dir' ,
> dt=40,
> nstep=500,
> &IONS
> ion_dynamics='verlet',
> ion_temperature='rescale-v',
> tempw=300.D0,
> nraise=1,
> tolp=100,
if you use rescale and tolp, you are not in a defined ensemble
either. since you remove or add energy to your system in an
arbitrary way.
cheers,
axel.
> pot_extrapolation='second-order',
> wfc_extrapolation='second-order'
> /
>
>
>
> Message: 5
> Date: Sat, 06 Jun 2009 10:37:16 -0400
> From: Axel Kohlmeyer <akohlmey at cmm.chem.upenn.edu>
> Subject: Re: [Pw_forum] How to set the ensemble when doing molecule
> dynamics calculation with pw.x
> To: PWSCF Forum <pw_forum at pwscf.org>
> Message-ID: <1244299036.3912.9870.camel at zero>
> Content-Type: text/plain
>
> On Sat, 2009-06-06 at 20:13 +0800, Lu Yunhao wrote:
>> Dear All
>
>> Can the pw.x code do molecule dynamic calculation with NVE ensemble?
>
> yes, of course!
>
>> I search the Manu and can not find any descriptions about ensemble.
>
> well, all you have to do is to a) have a constant number of atoms,
> b) a constant volume, and c) _not_ control the temperature.
>
> a) is trivial (you cannot add or remove atoms anyways)
> b) is simple, too (this is the default)
> c) only requires a look at the documentation of the &ions
> namelist. check out "tempw"
>
>
> it cannot get much simpler.
> axel.
>>
>>
>> Best wishes,
>>
>> Yunhao
>>
>> Resear Fellow
>>
>> NUS
>>
>>
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>
> --
> =======================================================================
> Axel Kohlmeyer akohlmey at cmm.chem.upenn.edu http://www.cmm.upenn.edu
> Center for Molecular Modeling -- University of Pennsylvania
> Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
> tel: 1-215-898-1582, fax: 1-215-573-6233, office-tel: 1-215-898-5425
> =======================================================================
> If you make something idiot-proof, the universe creates a better idiot.
>
>
>
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--
=======================================================================
Axel Kohlmeyer akohlmey at cmm.chem.upenn.edu http://www.cmm.upenn.edu
Center for Molecular Modeling -- University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582, fax: 1-215-573-6233, office-tel: 1-215-898-5425
=======================================================================
If you make something idiot-proof, the universe creates a better idiot.
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