[Pw_forum] PW taskgroups and a large run on a BG/P
David Farrell
davidfarrell2008 at u.northwestern.edu
Thu Feb 12 18:23:04 CET 2009
OK, I tried the Jan 12 2009 snapshot from the website with the BG/P
scalapack, blacs, goto and lapack. Things compiled fine.
When I ran on 128 cores in vn mode with -ntg 4 -ndiag 121, I got a
cholesky error:
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%
task # 103
from rdiaghg : error # 102
problems computing cholesky
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%
When I ran on 128 cores in dual mode with -ntg 4 -ndiag 121, I got the
cholesky error:
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%
task # 118
from rdiaghg : error # 102
problems computing cholesky
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%
When I ran on 128 cores in smp mode with -ntg 4 -ndiag 121, it ran fine.
I am going to pull down the latest CVS version and see if that changes
anything. It sounds like this shouldn't be a memory issue (and I don't
get any memory errors in stderr), but I may have to see if I can
reproduce this on a very small scale to see if it is something else.
Something that according to the memory output should only use a couple
hundred MB at most shouldn't require more than 1 GB to run.
Dave
On Feb 12, 2009, at 10:51 AM, Paolo Giannozzi wrote:
> On Feb 12, 2009, at 16:18 , David Farrell wrote:
>
>> OK - so perhaps I should try this same run with scalapack enabled
>> instead
>> just to be sure of what happens and that I haven't miscompiled
>> anything.
>> That is only available in the latest CVS versions right?
>
> right. You need option "-D__SCALAPACK" and to link to blacs and
> scalapack
>
> Paolo
> ---
> Paolo Giannozzi, Democritos and University of Udine, Italy
>
>
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David E. Farrell
Post-Doctoral Fellow
Department of Materials Science and Engineering
Northwestern University
email: d-farrell2 at northwestern.edu
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