[Pw_forum] Example21 Problem
Axel Kohlmeyer
akohlmey at cmm.chem.upenn.edu
Fri Jun 29 20:58:24 CEST 2007
On Fri, 29 Jun 2007, Eyvaz Isaev wrote:
EI> Hi,
EI>
EI> Inspecting your output file have shown that you have
EI> memory allocation problem with all 32, 64, 128 and 256
EI> atoms calculations (that is why just a few seconds),
EI> and others were skipped as it was expected.
EI>
EI> There is an advice to compile the program using with a
EI> keyword -ftrace=frame or -ftrace=full, though I do not
EI> know how it is useful, and presumably, compiler
eyvaz,
this is not an output from the run_example script, but
the default error message, that g95 compiled executables
spit out in case of crashes. g95 can be quite quirky at times.
i don't think that there is much use to that, unless you
have a lot of experience in debugging...
cheers,
axel.
EI> dependent. At least, you can try recompile the code
EI> using these keywords.
EI>
EI> Bests,
EI> Eyvaz.
EI>
EI> --- Amos Leffler <amos at errno.com> wrote:
EI>
EI> > Dear Forum,
EI> > Attached is the result of the following input
EI> > in example 21:
EI> > ./run_example 256
EI> > It calculates values for all sizes up to 256 and
EI> > skips the remainder.
EI> > However, I am puzzled that the calculations take
EI> > very little time
EI> > certainly less than a minute for each one. The
EI> > "README" note says it
EI> > takes a long time and should include more than what
EI> > is shown. There may
EI> > be more to this than I understand.
EI> >
EI> >
EI> > Amos Leffler
EI> > Axel Kohlmeyer wrote:
EI> > > On 6/27/07, Amos Leffler <amos at errno.com> wrote:
EI> > >> Dear Forum,
EI> > >> I found later after sending this note that
EI> > the program ran (in
EI> > >> background) but did the calculation for all of
EI> > the numbers of water
EI> > >> molecules. The original input did have as the
EI> > last entry a number (64)
EI> > >> so there still is a problem.
EI> > >
EI> > > i disagree. please explain first the existence of
EI> > the -ftrace=full
EI> > > which is obviously causing the problems you see.
EI> > omit it and
EI> > > the script will run fine.
EI> > >
EI> > > axel.
EI> > >
EI> > >>
EI> > >> Amos Leffler
EI> > >>
EI> > >> Axel Kohlmeyer wrote:
EI> > >> > On Tue, 26 Jun 2007, Amos Leffler wrote:
EI> > >> >
EI> > >> > AL> Dear Forum,
EI> > >> > AL> Attached are the details of a
EI> > problem I ran into
EI> > >> trying to
EI> > >> > AL> execute example21. I am using SuSE Linux
EI> > 10.2 which has
EI> > >> worked well
EI> > >> > AL> up to this point so I think the problem is
EI> > in the run_example
EI> > >> file.
EI> > >> >
EI> > >> > well, i would say the problem is in your using
EI> > of -ftrace=full. why?
EI> > >> > example21 is special and requires as an
EI> > argument the maximum number
EI> > >> > of water molecules that you want to run
EI> > (32-512). if you provide
EI> > >> >
EI> > >> > the error message stems from the numerical
EI> > compares of the first
EI> > >> > argument of the script, $1, with the
EI> > corresponding number of waters.
EI> > >> > the way it is done, allows to have a default
EI> > value of '0' (i.e.
EI> > >> > don't run any of those tests). your
EI> > -ftrace=full argument expands
EI> > >> > to a non-numerical value, hence the error
EI> > messages. in all other
EI> > >> > scripts it will be ignored, anyways.
EI> > >> >
EI> > >> > cheers,
EI> > >> > axel.
EI> > >> >
EI> > >> >
EI> > >> > AL>
EI> > >> > AL> Amos Leffler
EI> > >> > AL>
EI> > >> > AL> Walnut Creek, CA.
EI> > >> > AL>
EI> > >> > AL> unaffiliated
EI> > >> > AL>
EI> > >> > AL>
EI> > >> >
EI> > >> >
EI> > >>
EI> > >> _______________________________________________
EI> > >> Pw_forum mailing list
EI> > >> Pw_forum at pwscf.org
EI> > >>
EI> > http://www.democritos.it/mailman/listinfo/pw_forum
EI> > >>
EI> > >>
EI> > >
EI> > >
EI> >
EI> >
EI>
EI>
EI> -------------------------------------------------------------------
EI> Prof. Eyvaz Isaev,
EI> Theoretical Physics Department, Moscow State Institute of Steel & Alloys, Russia, and
EI> Condensed Matter Theory Group, Uppsala University, Sweden Eyvaz.Isaev at fysik.uu.se, eyvaz_isaev at yahoo.com
EI>
EI>
EI> ____________________________________________________________________________________
EI> Fussy? Opinionated? Impossible to please? Perfect. Join Yahoo!'s user panel and lay it on us. http://surveylink.yahoo.com/gmrs/yahoo_panel_invite.asp?a=7
EI>
EI> _______________________________________________
EI> Pw_forum mailing list
EI> Pw_forum at pwscf.org
EI> http://www.democritos.it/mailman/listinfo/pw_forum
EI>
--
=======================================================================
Axel Kohlmeyer akohlmey at cmm.chem.upenn.edu http://www.cmm.upenn.edu
Center for Molecular Modeling -- University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582, fax: 1-215-573-6233, office-tel: 1-215-898-5425
=======================================================================
If you make something idiot-proof, the universe creates a better idiot.
More information about the users
mailing list