[Pw_forum] symmetry operations
Miguel A. Salvadó
mass at uniovi.es
Wed May 24 13:20:31 CEST 2006
Well, from a practical point of view: If I have a complex structure whose
space group (let say cubic), cell parameters and crystal coordinates of the
asymmetric unit I know, How is the simplest form to input these atomic
coordinates in order the program recognize correctly the structure and all
the symmetry operations present?
Thanks and best regards,
Miguel Angel
-----Mensaje original-----
De: pw_forum-admin at pwscf.org [mailto:pw_forum-admin at pwscf.org] En nombre de
degironc
Enviado el: miércoles, 24 de mayo de 2006 10:14
Para: pw_forum at pwscf.org
Asunto: Re: [Pw_forum] symmetry operations
quoting from "Wyckoff" about Diamond
BEGIN{QUOTE}
II,i1:
The unit cubes of crystals with the {\it diamond structure} have eight atoms
in the position of $O_h ^7$ ($Fd3m$):
(8a) 000;0 1/2 1/2; 1/2 0 1/2; 1/2 1/2 0;
1/4 1/4 1/4; 1/4 3/4 3/4; 3/4 1/4 3/4; 3/4 3/4 1/4
or more briefly
(8a) 000; 1/4 1/4 1/4; F.C.
END{QUOTE}
This is fine ! BUT this refers to the cubic (SIMPLE CUBIC) structure
with 8 atoms per cell (the "F.C." label tells you to replicate the
previous 2-atom coordinates by shifting them by
0 1/2 1/2; 1/2 0 1/2; 1/2 1/2 0.
If you chose the FACE CENTERED CUBIC cell you have only two atoms per
unit cell
and different fundamental lattice vectors, hence 1/4 1/4 1/4 and 3/4 1/4
3/4 in crystal coordinates (w.r.t to these FCC fundamental lattice
vectors , NOT to the simple cubic ones) are not equivalent.
If you chose CARTESIAN coordinates in unit of alat(the default for
PWscf) then the two positions are obviously equivalent due to
translational symmetry.
best regards,
stefano
Miguel A. Salvadó wrote:
>Yes, I am using CRYSTAL coordinates. 3/4 1/4 3/4 and 1/4 1/4 1/4 differs in
>a 1/2 0 1/2 translation and then they are equivalent in a F-centered cell.
>In fact 0 0 0 and 3/4 1/4 3/4 are the coordinates for the position 8a in
>International Tables of Crystallography!!
>
>Best wishes,
>Miguel
>
>-----Mensaje original-----
>De: pw_forum-admin at pwscf.org [mailto:pw_forum-admin at pwscf.org] En nombre de
>degironc
>Enviado el: martes, 23 de mayo de 2006 19:44
>Para: pw_forum at pwscf.org
>Asunto: Re: [Pw_forum] symmetry operations
>
>Are you using CRYSTAL coordinates?
>in this case 3/4 1/4 3/4 and 1/4 1/4 1/4 are NOT equivalent.
>the former is wrong and corrseponds to the following cartesian coordinates
>(from the PWscf output)
> 2 Si tau( 2) = ( -0.7500000 0.5000000 0.5000000
)
>which are obviously wrong.
>stefano
>
>
>Miguel A. Salvadó wrote:
>
>
>
>>
>>
>>Dear PWusers:
>>
>>
>>
>>I do not understand how PWSCF generate the symmetry operations from
>>ibrav and crystal coordinates.
>>
>>A simple example: C diamond (Fd-3m) with C at 8a (0,0,0) (Cell choice 1).
>>
>>If I run a calculation with ibrav 2 (cubic F-centered) and two C atoms
>>at 0,0,0 and 3/4,1/4,3/4 the program found 16 symmetry operations.
>>
>>But if I change the second position to the equivalent one 1/4 1/4 1/4,
>>then the program found successfully 48 symmetry operations.
>>
>>I have found this problem with more complex structures and it is not
>>easy to check all the possibilities of equivalent positions combinations.
>>
>>Any kind of help will be welcome,
>>
>>Best wishes,
>>
>>
>>
>>Miguel A. Salvadó
>>
>>
>>
>>
>>
>>Miguel A. Salvadó
>>
>>Dpto. Quimica Fisica y Analitica
>>
>>Universidad de Oviedo
>>
>>Spain
>>
>>E-mail: mass at uniovi.es
>>
>>
>>
>>
>>
>>
>>
>>
>>
>
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