[Pw_forum] Parallel version and NFS
sir_puding at tut.by
sir_puding at tut.by
Tue Apr 4 11:09:39 CEST 2006
Hi, All.
Does the calculations of SCF runs in parallel depend on type of data
storage? I'm using a Linux PIII cluster with 2 proc. per node and NFS
for data storage. and have long row of messages about unconverged
eigenvalues. In serial variant there is no such messages. I've noticed
that .wfcN files updated unsimultaneously. Or maybe i started
calculations in a wrong way?
here is my output
Program PWSCF v.3.1 starts ...
Today is 4Apr2006 at 10:58:15
Parallel version (MPI)
Number of processors in use: 24
K-points division: npool = 4
R & G space division: proc/pool = 6
Ultrasoft (Vanderbilt) Pseudopotentials
Current dimensions of program pwscf are:
ntypx = 10 npk = 40000 lmax = 3
nchix = 6 ndmx = 2000 nbrx = 14 nqfx = 8
Starting configuration read from file silicon.save
Failed to open file silicon.save
Using input configuration
looking for the optimal diagonalization algorithm ...
dimension time para (sec) time serial (sec)
300 1.11000000 3.49000000
a parallel algorithm will be used for matrices larger than 300
Planes per process (thick) : nr3 = 48 npp = 8 ncplane = 2304
Proc/ planes cols G planes cols G columns G
Pool (dense grid) (smooth grid) (wavefct grid)
1 8 291 9118 8 291 9118 81 1351
2 8 292 9118 8 292 9118 82 1350
3 8 292 9118 8 292 9118 81 1349
4 8 292 9117 8 292 9117 81 1349
5 8 291 9117 8 291 9117 81 1349
6 8 291 9117 8 291 9117 83 1349
0 48 1749 54705 48 1749 54705 489 8097
bravais-lattice index = 0
lattice parameter (a_0) = 13.4834 a.u.
unit-cell volume = 2460.7699 (a.u.)^3
number of atoms/cell = 64
number of atomic types = 2
kinetic-energy cutoff = 30.0000 Ry
charge density cutoff = 120.0000 Ry
convergence threshold = 1.0E-08
beta = 0.7000
number of iterations used = 8 plain mixing
Exchange-correlation = SLA PW PBE PBE (1434)
nstep = 30
celldm(1)= 13.483400 celldm(2)= 0.000000 celldm(3)= 0.000000
celldm(4)= 0.000000 celldm(5)= 0.000000 celldm(6)= 0.000000
crystal axes: (cart. coord. in units of a_0)
a(1) = ( 1.001285 0.002854 0.002847 )
a(2) = ( 0.002854 1.001309 0.002854 )
a(3) = ( 0.002847 0.002854 1.001285 )
reciprocal axes: (cart. coord. in units 2 pi/a_0)
b(1) = ( 0.998733 -0.002839 -0.002831 )
b(2) = ( -0.002839 0.998709 -0.002839 )
b(3) = ( -0.002831 -0.002839 0.998733 )
PSEUDO 1 is C (US) zval = 4.0 lmax= 2 lloc= 0
Version 0 0 0 of US pseudo code
Using log mesh of 627 points
The pseudopotential has 4 beta functions with:
l(1) = 0
l(2) = 0
l(3) = 1
l(4) = 1
Q(r) pseudized with 0 coefficients, rinner = 0.000 0.000 0.000
0.000 0.000
PSEUDO 2 is N (US) zval = 5.0 lmax= 2 lloc= 0
Version 0 0 0 of US pseudo code
Using log mesh of 1257 points
The pseudopotential has 4 beta functions with:
l(1) = 0
l(2) = 0
l(3) = 1
l(4) = 1
Q(r) pseudized with 0 coefficients, rinner = 0.000 0.000 0.000
0.000 0.000
atomic species valence mass pseudopotential
C 4.00 12.01078 C ( 1.00)
N 5.00 14.00675 N ( 1.00)
cell mass = 58.56510 AMU
No symmetry!
Cartesian axes
site n. atom positions (a_0 units)
1 C tau( 1) = ( -0.0004112 -0.0002048 -0.0004112 )
2 C tau( 2) = ( 0.0020983 0.0022219 0.5009322 )
----
bla bla bla
----
G cutoff = 552.6120 ( 54705 G-vectors) FFT grid: ( 48, 48, 48)
nbndx = 1200 nbnd = 300 natomwfc = 256 npwx = 1141
nelec = 257.00 nkb = 512 ngl = 9118
--------
bla bla bla
-------
Cannot read rho : file not found
Initial potential from superposition of free atoms
starting charge 256.99668, renormalised to 257.00000
Starting wfc from file
total cpu time spent up to now is 12.84 secs
Self-consistent Calculation
iteration # 1 ecut= 30.00 ryd beta=0.70
Davidson diagonalization with overlap
WARNING: 20 eigenvalues not converged
WARNING: 18 eigenvalues not converged
WARNING: 23 eigenvalues not converged
WARNING: 33 eigenvalues not converged
WARNING: 15 eigenvalues not converged
WARNING: 19 eigenvalues not converged
WARNING: 23 eigenvalues not converged
WARNING: 19 eigenvalues not converged
WARNING: 20 eigenvalues not converged
WARNING: 26 eigenvalues not converged
WARNING: 20 eigenvalues not converged
WARNING: 25 eigenvalues not converged
WARNING: 24 eigenvalues not converged
WARNING: 21 eigenvalues not converged
Sergey
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