[Q-e-developers] (no subject)
maria del rosario diazgranados jimenz
marodiazg at hotmail.com
Thu Jan 22 18:30:00 CET 2015
hello could someone help me solve an error installing quantum espresso in ubuntu 14.04
licatuc at licatuc-All-Series:~/espresso-5.0.3$ ./configure
checking build system type... x86_64-unknown-linux-gnu
checking architecture... x86_64
checking for ifort... no
checking for pgf90... no
checking for pathf95... no
checking for sunf95... no
checking for openf95... no
checking for gfortran... gfortran
configure: WARNING: using cross tools not prefixed with host triplet
checking whether the Fortran compiler works... yes
checking for Fortran compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for Fortran flag to compile .f90 files... none
checking for mpif90... mpif90
checking whether we are using the GNU Fortran compiler... yes
checking whether mpif90 accepts -g... yes
checking version of mpif90... gfortran 4.8.2
setting F90... gfortran
setting MPIF90... mpif90
checking for cc... cc
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
setting CC... cc
checking how to run the C preprocessor... cc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of int *... 8
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for struct mallinfo.arena... yes
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
setting F77... gfortran
using F90... gfortran
setting FFLAGS... -O3 -g
setting F90FLAGS... $(FFLAGS) -x f95-cpp-input
setting FFLAGS_NOOPT... -O0 -g
setting CFLAGS... -O3
setting CPP... cpp
setting CPPFLAGS... -P -traditional
setting LD... mpif90
setting LDFLAGS... -g
setting AR... ar
setting ARFLAGS... ruv
checking whether make sets $(MAKE)... yes
checking whether Fortran files must be preprocessed... no
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking for library containing dgemm... no
MKL not found
in /opt/intel/Compiler/*/*/mkl/lib/em64t: checking for library containing dgemm... no
MKL not found
in /opt/intel/mkl/*/lib/em64t: checking for library containing dgemm... no
MKL not found
in /opt/intel/mkl*/lib/em64t: checking for library containing dgemm... no
MKL not found
checking for library containing dgemm... no
in /usr/local/lib: checking for library containing dgemm... no
checking for library containing dgemm... -lblas
checking for library containing dspev... -llapack
setting BLAS_LIBS... -lblas
setting LAPACK_LIBS... -llapack -lblas
checking for library containing dfftw_execute_dft... -lfftw3
setting FFT_LIBS... -lfftw3
setting MASS_LIBS...
checking for library containing mpi_init... none required
setting MPI_LIBS...
checking for library containing mpi_init... (cached) none required
checking for library containing pdgemr2d... no
checking for library containing pdgemr2d... no
checking for library containing pdgemr2d... no
checking for library containing pdgemr2d... no
setting SCALAPACK_LIBS... -L/bgsys/local/scalapack/lib -lscalapack -L/bgsys/local/blacs/lib -lblacs -lblacsF77init -lblacs
setting DFLAGS... -D__GFORTRAN -D__STD_F95 -D__FFTW3 -D__MPI -D__PARA
setting IFLAGS... -I../include
setting FDFLAGS... $(DFLAGS)
checking for ranlib... ranlib
setting RANLIB... ranlib
checking for wget... wget -O
setting WGET... wget -O
configure: creating ./config.status
config.status: creating include/fft_defs.h
config.status: creating make.sys
config.status: creating configure.msg
config.status: creating install/make_wannier90.sys
config.status: creating install/make_blas.inc
config.status: creating install/make_lapack.inc
config.status: creating include/c_defs.h
config.status: include/c_defs.h is unchanged
--------------------------------------------------------------------
ESPRESSO can take advantage of several optimized numerical libraries
(essl, fftw, mkl...). This configure script attempts to find them,
but may fail if they have been installed in non-standard locations.
If a required library is not found, the local copy will be compiled.
The following libraries have been found:
BLAS_LIBS= -lblas
LAPACK_LIBS= -llapack -lblas
FFT_LIBS= -lfftw3
Please check if this is what you expect.
If any libraries are missing, you may specify a list of directories
to search and retry, as follows:
./configure LIBDIRS="list of directories, separated by spaces"
Parallel environment detected successfully.\
Configured for compilation of parallel executables.
For more info, read the ESPRESSO User's Guide (Doc/users-guide.tex).
--------------------------------------------------------------------
configure: success
mv: ¿intentar sobreescribir «./install/config.log», sustituyendo el modo 0644? (rw-r--r--)
mv: ¿intentar sobreescribir «./install/config.status», sustituyendo el modo 0755? (rwxr-xr-x)
licatuc at licatuc-All-Series:~/espresso-5.0.3$ sudo su -p
[sudo] password for licatuc:
root at licatuc-All-Series:~/espresso-5.0.3# sudo su -p
root at licatuc-All-Series:~/espresso-5.0.3# sudo apt-get install g++-4.9
Leyendo lista de paquetes... Hecho
Creando árbol de dependencias
Leyendo la información de estado... Hecho
E: No se ha podido localizar el paquete g++-4.9
E: No se pudo encontrar ningún paquete con la expresión regular «g++-4.9»
root at licatuc-All-Series:~/espresso-5.0.3# make all
test -d bin || mkdir bin
cd install ; make -f extlibs_makefile libiotk
make[1]: se ingresa al directorio «/home/licatuc/espresso-5.0.3/install»
if test ! -d ../S3DE; then \
(gzip -dc ../archive/iotk-1.2.beta.tar.gz | (cd ../; tar -xvf -)) ; \
if test -e Makefile_iotk; then \
(cp Makefile_iotk ../S3DE/iotk/src/Makefile); fi; \
if test -e iotk_config.h; then \
(cp iotk_config.h ../S3DE/iotk/include/iotk_config.h); fi; fi
cd ../S3DE/iotk/src; make lib+util;
make[2]: se ingresa al directorio «/home/licatuc/espresso-5.0.3/S3DE/iotk/src»
make[2]: No se hace nada para «lib+util».
make[2]: se sale del directorio «/home/licatuc/espresso-5.0.3/S3DE/iotk/src»
cd ../bin; ln -fs ../S3DE/iotk/tools/iotk .; \
ln -fs ../S3DE/iotk/src/iotk.x .; \
ln -fs ../S3DE/iotk/src/iotk_print_kinds.x .; \
cd ../; ln -fs S3DE/iotk iotk
make[1]: se sale del directorio «/home/licatuc/espresso-5.0.3/install»
cd install ; make -f extlibs_makefile libelpa
make[1]: se ingresa al directorio «/home/licatuc/espresso-5.0.3/install»
touch fake_libelpa.a
rm fake_libelpa.a
make[1]: se sale del directorio «/home/licatuc/espresso-5.0.3/install»
( cd Modules ; if test "make" = "" ; then make TLDEPS= all ; \
else make TLDEPS= all ; fi )
make[1]: se ingresa al directorio «/home/licatuc/espresso-5.0.3/Modules»
mpif90 -O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW3 -D__MPI -D__PARA -I../include -I../iotk/src -I../ELPA/src -I. -c fft_scalar.f90
Warning: Nonexistent include directory "../ELPA/src"
mpif90 -O3 -g -x f95-cpp-input -D__GFORTRAN -D__STD_F95 -D__FFTW3 -D__MPI -D__PARA -I../include -I../iotk/src -I../ELPA/src -I. -c fft_custom.f90
Warning: Nonexistent include directory "../ELPA/src"
fft_custom.f90:538.64:
CALL MPI_GATHER( pw1_tmp, npw1_max, MPI_DOUBLE_COMPLEX,&
1
Error: Symbol 'mpi_double_complex' at (1) has no IMPLICIT type
fft_custom.f90:497.56:
CALL MPI_ALLREDUCE( ngwl1, ngwl1_max, 1, MPI_INTEGER, MPI_MAX, gid, IERR )
1
Error: Symbol 'mpi_integer' at (1) has no IMPLICIT type
fft_custom.f90:497.65:
CALL MPI_ALLREDUCE( ngwl1, ngwl1_max, 1, MPI_INTEGER, MPI_MAX, gid, IERR )
1
Error: Symbol 'mpi_max' at (1) has no IMPLICIT type
make[1]: *** [fft_custom.o] Error 1
make[1]: se sale del directorio «/home/licatuc/espresso-5.0.3/Modules»
make: *** [mods] Error 2
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.quantum-espresso.org/pipermail/developers/attachments/20150122/31c6584b/attachment.html>
More information about the developers
mailing list