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Hi Kanka,<br>
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_stdio.h is a header file that comes with Xcode. You should try to update the headers with a command similar to
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cd /Library/Developer/CommandLineTools/Packages/ <br>
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open macOS_SDK_headers_for_macOS_10.14.pkg<br>
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(This will open an installation wizard). And then compile QE.<br>
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Daniel Mejia Rodriguez<br>
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Postdoctoral Associate<br>
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University of Florida <br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> users <users-bounces@lists.quantum-espresso.org> on behalf of Ye Luo <xw111luoye@gmail.com><br>
<b>Sent:</b> Wednesday, November 27, 2019 9:28:32 AM<br>
<b>To:</b> Quantum ESPRESSO users Forum <users@lists.quantum-espresso.org><br>
<b>Subject:</b> Re: [QE-users] Quantum espresso installation problem in MAC</font>
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<div><span style="font-size:9.0pt; font-family:"Arial",sans-serif; color:#FA4616"><b>[External Email]</b></span>
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<div>The error message indicates the gcc8.3 you have installed is not compatible with your OS.</div>
<div>QE includes <stdio.h> which is standard C. The stdio.h shipped by the compiler tries to access _stdio.h which doesn't exist in the system.</div>
<div>So probably you can write a dummy C program with just include stdio.h and a main function and then use it to debug your compiler installation first.</div>
<div>This is not a QE problem and hopefully you can find answers on Google.</div>
<div>Best,k<br>
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<div>Ye<br>
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<div dir="ltr">===================<br>
Ye Luo, Ph.D.<br>
Computational Science Division & Leadership Computing Facility<br>
Argonne National Laboratory</div>
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<div dir="ltr" class="gmail_attr">Kanka Ghosh <<a href="mailto:kanka.ghosh@u-bordeaux.fr">kanka.ghosh@u-bordeaux.fr</a>> $BP2(B2019$BG/(B11$B7n(B26$BF|<~Fs(B $B>e8a(B4:45$B<LF;!'(B<br>
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<div>Hello,</div>
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<div>I am trying to install quantum espresso in iMac (macOS Mojave, version 10.14.6). While it configured properly, I am facing some issues while compiling with make all or make pw or any make command. It is showing the following error after executing make
all command : </div>
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<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"><br>
</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"><br>
</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">make all</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">test -d bin || mkdir bin</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">( cd clib ; /Library/Developer/CommandLineTools/usr/bin/make TLDEPS= all || exit 1 )</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">gcc -O3 -D__FFTW3 -D__MPI -I/Users/kghosh/Downloads/qe-6.4.1//include -I/Users/kghosh/Downloads/qe-6.4.1//FoX/finclude -I/Users/kghosh/Downloads/qe-6.4.1//S3DE/iotk/include/<span>
</span>-c customize_signals.c</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">gcc -O3 -D__FFTW3 -D__MPI -I/Users/kghosh/Downloads/qe-6.4.1//include -I/Users/kghosh/Downloads/qe-6.4.1//FoX/finclude -I/Users/kghosh/Downloads/qe-6.4.1//S3DE/iotk/include/<span>
</span>-c stack.c</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">In file included from <b>
stack.c:9</b>:</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"><b>/usr/local/lib/gcc/x86_64-apple-darwin18.5.0/8.3.0/include-fixed/stdio.h:78:10:</b></span><span style="font-variant-ligatures:no-common-ligatures; color:rgb(180,36,25)"><b>fatal error:
</b></span><span style="font-variant-ligatures:no-common-ligatures">_stdio.h: No such file or directory</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"><span> </span>#include </span>
<span style="font-variant-ligatures:no-common-ligatures; color:rgb(180,36,25)"><b><_stdio.h></b></span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"><span> </span></span><span style="font-variant-ligatures:no-common-ligatures; color:rgb(180,36,25)"><b>^~~~~~~~~~</b></span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">compilation terminated.</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">make[1]: *** [stack.o] Error 1</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">make: *** [libs] Error 1</span></p>
<p style="margin:0px; font-style:normal; font-variant-caps:normal; font-weight:normal; font-stretch:normal; font-size:11px; line-height:normal; font-family:Menlo; color:rgb(0,0,0)">
<br>
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Can anybody help to overcome this issue ? I have installed all gcc compilers as well as the libraries using brew in the machine.</div>
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Thanks in advanced,</div>
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Kanka</div>
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Postdoc, I2M-bordeaux</div>
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University of Bordeaux, CNRS UMR 5295</div>
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