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HI David,
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<div class="">Have you attempted to compile with MPICH or OpenMPI? If so, can you provide the output files after running an example calculation?</div>
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<div class="">Thanks,<br class="">
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<div class="">On Feb 13, 2019, at 5:11 PM, DAVID BARCENE <<a href="mailto:david.barcene@utp.ac.pa" class="">david.barcene@utp.ac.pa</a>> wrote:</div>
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<div style="" class=""><span style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 14pt;" class="">Hello, I'm new to quantum espresso and I'm having some issues while running the examples. I installed QE in my laptop (Lenovo Thinkpad E480, i7-8550U
running Fedora 29) using intel mpi to take advantage of the quad core cpu. </span>
<span style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 14pt;" class="">I have compiled QE using the intel fortran compiler and intel C compiler including the MKL provided by the Intel Paralell Studio XE 2019 update 1 cluster edition. No
warnings or errors were shown during the compilation but when I run the example ~/qe-6.3/PW/examples/example01 it just aborts. A forum suggested to set FI_LOG_LEVEL= debug to collect logs and this is the output I get:</span></div>
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</span></div>
<div style="" class=""><font face="Calibri, Arial, Helvetica, sans-serif" class=""><span style="font-size:18.6667px" class="">********************************************************************************************************************************************</span></font></div>
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<span style="font-family:monospace" class=""><span style="background-color: rgb(255, 255, 255);" class="">[dbarcene@NGC2501 example01]$ ./run_example </span><br class="">
<br class="">
/home/dbarcene/qe-6.3/PW/examples/example01 : starting <br class="">
<br class="">
This example shows how to use pw.x to calculate the total energy and <br class="">
the band structure of four simple systems: Si, Al, Cu, Ni. <br class="">
<br class="">
executables directory: /home/dbarcene/qe-6.3/bin <br class="">
pseudo directory: /home/dbarcene/qe-6.3/pseudo <br class="">
temporary directory: /home/dbarcene/qe-6.3/tempdir <br class="">
checking that needed directories and files exist... done <br class="">
<br class="">
running pw.x as: mpirun -np 4 /home/dbarcene/qe-6.3/bin/pw.x -nk 1 -nd 1 -nb 1 -nt 1 <br class="">
<br class="">
running the scf calculation for Si...Abort(1094543) on node 1 (rank 1 in comm 0): Fatal error in PMPI_Init: Other MPI error, error stack:
<br class="">
MPIR_Init_thread(639)......: <br class="">
MPID_Init(860).............: <br class="">
MPIDI_NM_mpi_init_hook(689): OFI addrinfo() failed (ofi_init.h:689:MPIDI_NM_mpi_init_hook:No data available)
<br class="">
Abort(1094543) on node 2 (rank 2 in comm 0): Fatal error in PMPI_Init: Other MPI error, error stack:
<br class="">
MPIR_Init_thread(639)......: <br class="">
MPID_Init(860).............: <br class="">
MPIDI_NM_mpi_init_hook(689): OFI addrinfo() failed (ofi_init.h:689:MPIDI_NM_mpi_init_hook:No data available)
<br class="">
Abort(1094543) on node 3 (rank 3 in comm 0): Fatal error in PMPI_Init: Other MPI error, error stack:
<br class="">
MPIR_Init_thread(639)......: <br class="">
MPID_Init(860).............: <br class="">
MPIDI_NM_mpi_init_hook(689): OFI addrinfo() failed (ofi_init.h:689:MPIDI_NM_mpi_init_hook:No data available)
<br class="">
Abort(1094543) on node 0 (rank 0 in comm 0): Fatal error in PMPI_Init: Other MPI error, error stack:
<br class="">
MPIR_Init_thread(639)......: <br class="">
MPID_Init(860).............: <br class="">
MPIDI_NM_mpi_init_hook(689): OFI addrinfo() failed (ofi_init.h:689:MPIDI_NM_mpi_init_hook:No data available)
<br class="">
[cli_1]: readline failed <br class="">
forrtl: error (78): process killed (SIGTERM) <br class="">
Image PC Routine Line Source <br class="">
pw.x 0000000001A5EAC4 Unknown Unknown Unknown <br class="">
libpthread-2.28.s 00007FE6FEB3B030 Unknown Unknown Unknown <br class="">
pw.x 00000000011BF2F0 Unknown Unknown Unknown <br class="">
pw.x 0000000000CBA309 Unknown Unknown Unknown <br class="">
pw.x 0000000000CB9D37 Unknown Unknown Unknown <br class="">
pw.x 0000000000407286 Unknown Unknown Unknown <br class="">
pw.x 0000000000407222 Unknown Unknown Unknown <br class="">
libc-2.28.so 00007FE6FADC0413 __libc_start_main Unknown Unknown <br class="">
pw.x 000000000040712E Unknown Unknown Unknown <br class="">
forrtl: error (78): process killed (SIGTERM) <br class="">
Image PC Routine Line Source <br class="">
pw.x 0000000001A5EAC4 Unknown Unknown Unknown <br class="">
libpthread-2.28.s 00007F05A7AEF030 Unknown Unknown Unknown <br class="">
libpthread-2.28.s 00007F05A7AEDDC0 __read Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F05A65D399F Unknown Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F05A65D2D32 Unknown Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F05A4C158D0 Unknown Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F05A4CC6613 MPIR_Err_return_c Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F05A58AA299 MPI_Init Unknown Unknown <br class="">
libmpifort.so.12. 00007F05A40114EB MPI_INIT Unknown Unknown <br class="">
pw.x 0000000000CBA2F8 Unknown Unknown Unknown <br class="">
pw.x 0000000000CB9D37 Unknown Unknown Unknown <br class="">
pw.x 0000000000407286 Unknown Unknown Unknown <br class="">
pw.x 0000000000407222 Unknown Unknown Unknown <br class="">
libc-2.28.so 00007F05A3D74413 __libc_start_main Unknown Unknown <br class="">
pw.x 000000000040712E Unknown Unknown Unknown <br class="">
forrtl: error (78): process killed (SIGTERM) <br class="">
Image PC Routine Line Source <br class="">
pw.x 0000000001A5EAC4 Unknown Unknown Unknown <br class="">
libpthread-2.28.s 00007F73A282A030 Unknown Unknown Unknown <br class="">
libpthread-2.28.s 00007F73A2828DC0 __read Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F73A130E99F Unknown Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F73A130DD32 Unknown Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F739F9508D0 Unknown Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F739FA01613 MPIR_Err_return_c Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F73A05E5299 MPI_Init Unknown Unknown <br class="">
libmpifort.so.12. 00007F739ED4C4EB MPI_INIT Unknown Unknown <br class="">
pw.x 0000000000CBA2F8 Unknown Unknown Unknown <br class="">
pw.x 0000000000CB9D37 Unknown Unknown Unknown <br class="">
pw.x 0000000000407286 Unknown Unknown Unknown <br class="">
pw.x 0000000000407222 Unknown Unknown Unknown <br class="">
libc-2.28.so 00007F739EAAF413 __libc_start_main Unknown Unknown <br class="">
pw.x 000000000040712E Unknown Unknown Unknown <br class="">
forrtl: error (78): process killed (SIGTERM) <br class="">
Image PC Routine Line Source <br class="">
pw.x 0000000001A5EAC4 Unknown Unknown Unknown <br class="">
libpthread-2.28.s 00007F114000F030 Unknown Unknown Unknown <br class="">
libpthread-2.28.s 00007F114000DDC0 __read Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F113EAF399F Unknown Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F113EAF2D32 Unknown Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F113D1358D0 Unknown Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F113D1E6613 MPIR_Err_return_c Unknown Unknown <br class="">
libmpi.so.12.0.0 00007F113DDCA299 MPI_Init Unknown Unknown <br class="">
libmpifort.so.12. 00007F113C5314EB MPI_INIT Unknown Unknown <br class="">
pw.x 0000000000CBA2F8 Unknown Unknown Unknown <br class="">
pw.x 0000000000CB9D37 Unknown Unknown Unknown <br class="">
pw.x 0000000000407286 Unknown Unknown Unknown <br class="">
pw.x 0000000000407222 Unknown Unknown Unknown <br class="">
libc-2.28.so 00007F113C294413 __libc_start_main Unknown Unknown <br class="">
pw.x 000000000040712E Unknown Unknown Unknown <br class="">
Error condition encountered during test: exit status = 179 <br class="">
Aborting</span></div>
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<span style="font-family:monospace" class="">Thanks in advance for any help you may provide.</span></div>
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<span style="font-family:monospace" class="">All the best</span></div>
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<span style="font-family:monospace" class="">David Barcene<br class="">
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