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</o:shapelayout></xml><![endif]--></head><body lang=JA link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'>Dear Filippo, Fabio<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'>Thank you for the comment. <o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'>Yes, core file is generated and will analyze this.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'>So far I have tried your suggestions but situation didn’t change and the same error<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'>occurred. Even when I used older versions of Intel compiler, v13 and 14,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'>the error was reproduced. I will try this on more using another system this week.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'>Best regards<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'>Kai<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D'><o:p> </o:p></span></p><div style='border:none;border-left:solid blue 1.5pt;padding:0mm 0mm 0mm 4.0pt'><div><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0mm 0mm 0mm'><p class=MsoNormal><b><span lang=EN-US style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span lang=EN-US style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> pw_forum-bounces@pwscf.org [mailto:pw_forum-bounces@pwscf.org] <b>On Behalf Of </b>Filippo Spiga<br><b>Sent:</b> Sunday, January 25, 2015 11:07 PM<br><b>To:</b> PWSCF Forum<br><b>Cc:</b> <q-e-developers@qe-forge.org><br><b>Subject:</b> Re: [Pw_forum] Build QE for Intel Phi native run<o:p></o:p></span></p></div></div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US>Dear Hideaki,<br> ,<o:p></o:p></span></p><div><p class=MsoNormal><span lang=EN-US>Fabio Affinito can advise for the Intel Phi part however I do suggest to run configure in this way:<o:p></o:p></span></p></div><div><div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US style='font-family:"Andale Mono","serif"'>./configure --enable-openmp --enable-parallel --with-scalapack=intel</span><span lang=EN-US><o:p></o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US>and only after edit the make.sys to eventually modify the libraries patch and names. The configure should be able to pickup MKL and ScaLAPACK if the environment is set correctly.<o:p></o:p></span></p><div><div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US>The problem you see is additional to the one I noticed while ago with the latest 15.x Intel compiler. If you can systematically reproduce this compiler seg fault then it is worth to file a bug report to Intel. It mention a core file... do you have one in the PW/src directory?<o:p></o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US>F<o:p></o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US>On Jan 23, 2015, at 3:59 PM, Hideaki Kuraishi <<a href="mailto:Hideaki.Kuraishi@uk.fujitsu.com">Hideaki.Kuraishi@uk.fujitsu.com</a>> wrote:<br><br><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>Hello,<br><br>I have been trying to build QE 5.0.2 with Intel Compiler 15.0.0 and Intel MPI 5.0 to run in native mode. However, though configure is fine, it fails at make phase with segmentation fault error as follows.<br><br>--------------------------------------<br> :<br>mpiifort -openmp -o bands_FS.x bands_FS.o -L$MKLROOT/lib/mic -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -liopm5 $MKLROOT/lib/mic/libmkl_lapack95_lp64.a -liomp5 $HOME/mkl/lib/libfftw3xf_intel.a -L$MKLROOT/lib/mic -lmkl_intel_lp64 -liomp5<br><br>/opt/intel/impi/5.0.0.028/intel64/bin/mpiifort: line 729: 5630 Segmentation fault (core dumped) $Show $FC $FCFLAGS "${allargs[@]}" $FCMODDIRS $FCINCDIRS -L${libdir}${MPILIBDIR} -L$libdir $rpath_opt $mpilibs $I_MPI_OTHERLIBS $LDFLAGS $MPI_OTHERLIBS<br><br>( cd ../../bin ; ln -fs ../PW/tools/bands_FS.x . )<br><br>mpiifort -openmp -o kvecs_FS.x kvecs_FS.o -L$MKLROOT/lib/mic -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -liopm5 $MKLROOT/lib/mic/libmkl_lapack95_lp64.a -liomp5 $HOME/mkl/lib/libfftw3xf_intel.a -L$MKLROOT/lib/mic -lmkl_intel_lp64 -liomp5<br><br>/opt/intel/impi/5.0.0.028/intel64/bin/mpiifort: line 729: 5656 Segmentation fault (core dumped) $Show $FC $FCFLAGS "${allargs[@]}" $FCMODDIRS $FCINCDIRS -L${libdir}${MPILIBDIR} -L$libdir $rpath_opt $mpilibs $I_MPI_OTHERLIBS $LDFLAGS $MPI_OTHERLIBS<br><br>( cd ../../bin ; ln -fs ../PW/tools/kvecs_FS.x . )<br> : <br>--------------------------------------<br><br>If someone has experienced the same error, could you please share the information on how to solve this?<br><br>My procedure is...<br><br>(1) Configure<br>export CC=mpicc<br>export FC=mpiifort<br>export F90=$FC<br>export MPIF90=$FC<br>export AR="xiar"<br>export CFLAGS="-mmic -openmp"<br>export FFLAGS=$CFLAGS<br>export FCFLAGS=$CFLAGS<br>export BLAS_LIBS="-L$MKLROOT/lib/mic -lmkl_intel_lp64 -liomp5" <br>export LAPACK_LIBS="$MKLROOT/lib/mic/libmkl_lapack95_lp64.a -liomp5" <br>export SCALAPACK_LIBS="-L$MKLROOT/lib/mic -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -liopm5"<br><br>$ ./configure --enable-openmp --enable-parallel<br><br>(2) Build<br>$ make pw 2>&1 | tee LOG.make<br><br>Best regards<br>Kai<br><br>______________________________________________________________________<br><br>Fujitsu Laboratories of Europe Limited<br>Hayes Park Central, Hayes End Road, Hayes, Middlesex, UB4 8FE<br>Registered No. 4153469<br><br>This e-mail and any attachments are for the sole use of addressee(s) and<br>may contain information which is privileged and confidential. Unauthorised<br>use or copying for disclosure is strictly prohibited. The fact that this<br>e-mail has been scanned by Trendmicro Interscan does not guarantee that <br>it has not been intercepted or amended nor that it is virus-free.<br><br><br>_______________________________________________<br>Pw_forum mailing list<br><a href="mailto:Pw_forum@pwscf.org">Pw_forum@pwscf.org</a><br><a href="http://pwscf.org/mailman/listinfo/pw_forum">http://pwscf.org/mailman/listinfo/pw_forum</a><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><div><p class=MsoNormal style='margin-bottom:12.0pt'><span lang=EN-US>--<br>Mr. Filippo SPIGA, M.Sc.<br><a href="http://filippospiga.info">http://filippospiga.info</a> ~ skype: filippo.spiga<br><br>«Nobody will drive us out of Cantor's paradise.» ~ David Hilbert<br><br>*****<br>Disclaimer: "Please note this message and any attachments are CONFIDENTIAL and may be privileged or otherwise protected from disclosure. The contents are not to be disclosed to anyone other than the addressee. Unauthorized recipients are requested to preserve this confidentiality and to advise the sender immediately of any error in transmission."<o:p></o:p></span></p></div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div></div></div></div></div></div></body></html>
<table><tr><td bgcolor=#ffffff><font color=#000000><pre>______________________________________________________________________
Fujitsu Laboratories of Europe Limited
Hayes Park Central, Hayes End Road, Hayes, Middlesex, UB4 8FE
Registered No. 4153469
This e-mail and any attachments are for the sole use of addressee(s) and
may contain information which is privileged and confidential. Unauthorised
use or copying for disclosure is strictly prohibited. The fact that this
e-mail has been scanned by Trendmicro Interscan does not guarantee that
it has not been intercepted or amended nor that it is virus-free.</pre></font></td></tr></table>