[Pw_forum] Error while running the code on HPC cluster

dkartik dkartik at iitk.ac.in
Thu Jul 6 12:35:09 CEST 2017


Dear QE Users  

While running the QE on HPC cluster i am getting following error, kindly
help me to go through this. I am submitting the job using qsub. 

Copyright (C) 2009-2014 Intel Corporation. All rights reserved.
Intel(R) Inspector XE 2015 (build 379161)
Copyright (C) 2009-2014 Intel Corporation. All rights reserved.
Intel(R) VTune(TM) Amplifier XE 2015 (build 393444)
Copyright (C) 2009-2014 Intel Corporation. All rights reserved.
Intel(R) Advisor XE 2015 (build 380555)
/home/dkartik/Home/Software/qe-6.1/CPV/src/cp.x: symbol lookup error:
/usr/mpi/gcc/openmpi-1.10.5a1/lib64/libmpi_mpifh.so.12: undefined
symbol: mpi_fortran_weights_empty

Following is the script of input job submitted 

#!/bin/bash
#PBS -N water
#PBS -q mini
#PBS -l nodes=1:ppn=20
#PBS -j oe
cd $PBS_O_WORKDIR
export I_MPI_FABRICS=shm:dapl
export I_MPI_MPD_TMPDIR=/home/dkartik
source /opt/software/intel/initpaths intel64
mpirun -machinefile $PBS_NODEFILE -n 20
/home/dkartik/Home/Software/qe-6.1/CPV/src/cp.x < h2o_mol1.in 

Sincerely 

Kartikeya Dixit 

PhD Candidate 

IIT Kanpur
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