[Pw_forum] Fwd: problem with running ./run_all_examples in PHonon/examples folder

Anna Kuznetsova kuznetsova.ann at gmail.com
Tue Jul 15 05:13:22 CEST 2014


Dear all,

I have a problem with running examples in the PHonon folder using
./run_all_examples command although the same command works well when doing
it for PW examples. There must be something special with the way ph.x
runs...
I have Mac 10.8.5 and QE 5.0.2, which was installed without any errors just
with couple warnings. The examples I was running are in its PHonon/examples
folder.
I would be grateful to you for your help. May be my installation of QE
lacks something...
Thank you

Please see the beginning of my log below:

alexey-sorokin:examples admin$ ./run_all_examples

run_all_examples: starting

/Applications/Quantum_ESPRESSO/espresso-5.0.2/PHonon/examples/example01 :
starting

This example shows how to use pw.x and ph.x to calculate phonon
frequencies at Gamma and X for Si and C in the diamond structure and
for fcc-Ni.

  executables directory: /Applications/Quantum_ESPRESSO/espresso-5.0.2/bin
  pseudo directory:
 /Applications/Quantum_ESPRESSO/espresso-5.0.2/pseudo
  temporary directory:   /Users/admin/tmp

  checking that needed directories and files exist... done

  running pw.x as:   /Applications/Quantum_ESPRESSO/espresso-5.0.2/bin/pw.x
 -nband 1 -ntg 1
  running ph.x as:   /Applications/Quantum_ESPRESSO/espresso-5.0.2/bin/ph.x
 -nband 1 -ntg 1

  cleaning /Users/admin/tmp... done
  running the scf calculation for Si... done
  running the phonon calculation at Gamma for Si...
Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.

Backtrace for this error:
#0  0x104991f92
#1  0x10499275e
#2  0x7fff8b4e3909
#3  0x7fff90aabd15
#4  0x10343a3c4
#5  0x103486d78
#6  0x10343b353
#7  0x103445170
#8  0x1033edc3e
#9  0x1033ce55e
#10  0x1037eeb0e
example01/run_example: line 140: 16360 Segmentation fault: 11  $PH_COMMAND
< si.phG.in > si.phG.out
 done
  running the phonon calculation at X for Si...
Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.

Backtrace for this error:
#0  0x105ad2f92
#1  0x105ad375e
#2  0x7fff8b4e3909
#3  0x7fff90aabd15
#4  0x1045aba21
#5  0x104583901
#6  0x10450d5a6
#7  0x10492db0e
example01/run_example: line 156: 16366 Segmentation fault: 11  $PH_COMMAND
< si.phX.in > si.phX.out
Error condition encountered during test: exit status = 139
Aborting


-- 
Best regards,
Anna Kuznetsova



-- 
Best regards,
Anna
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