[Pw_forum] Installation error on Xcrysden-1.5.21-src-all
Jiaye Li
jameslipd at gmail.com
Wed Nov 11 09:19:18 CET 2009
Problems have just been solved. :-)
I just export the libs of C compiler and X11, and recompile it successfully.
On Wed, Nov 11, 2009 at 3:55 PM, <pw_forum-request at pwscf.org> wrote:
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> Today's Topics:
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> 1. phonon calculations - parallelization over modes
> (Nichols A. Romero)
> 2. Installation error on Xcrysden-1.5.21-src-all (Jiaye Li)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 10 Nov 2009 19:20:24 -0600
> From: "Nichols A. Romero" <naromero at gmail.com>
> Subject: [Pw_forum] phonon calculations - parallelization over modes
> To: PWSCF Forum <pw_forum at pwscf.org>
> Message-ID:
> <6ac064b60911101720w520bb9a4x415fec24181a01a1 at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi,
>
> Are QE phonon calculations parallel over modes (which should be
> embarrassingly parallel) + q-points?
>
> Also, on a completely different note, is there any way to search the mail
> archive?
> http://www.democritos.it/pipermail/pw_forum/
>
> --
> Nichols A. Romero, Ph.D.
> Argonne Leadership Computing Facility
> Argonne, IL 60490
> (630) 252-3441 (O)
> (630) 470-0462 (C)
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> Message: 2
> Date: Wed, 11 Nov 2009 11:30:51 +0800
> From: Jiaye Li <jameslipd at gmail.com>
> Subject: [Pw_forum] Installation error on Xcrysden-1.5.21-src-all
> To: PWSCF Forum <pw_forum at pwscf.org>
> Message-ID:
> <b5d787260911101930v40346af1qf8fa47feb084fffa at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Dear all
>
> I tried to install the Xcrysden-1.5.21-src-all source code on my fc11 PC. I
> have already installed ifort10 and icc10.
> libXmu-devel-1.0.4-2.fc11.i586.rpm
> is also installed correctly. When I type 'make all' in the root directory
> of
> Xcrysden source, tcl and tk went on smoothly, but C code compiling reported
> the error. Please see the follows:
>
>
> #------------------------------#
> # #
> # Compiling XCRYSDEN C-code #
> # #
> #------------------------------#
>
> cd C; make "TOPDIR=/home/jy/Download/XCrySDen-1.5.21-src-all" compile
> make[1]: Entering directory `/home/jy/Download/XCrySDen-1.5.21-src-all/C'
> make TOPDIR=/home/jy/Download/XCrySDen-1.5.21-src-all
> make[2]: Entering directory `/home/jy/Download/XCrySDen-1.5.21-src-all/C'
> gcc -static -ansi -funroll-loops -DUSE_FONTS detnsplit.o xcAppInit.o
> xcballstick.o xcviewport.o xcLabels.o vectors.o xcDisplayFunc2.o
> xcAtomAdd.o
> loadValues.o hpsort.o auxilproc.o xcdebug.o 3D.o xcDisplayFunc.o readstrf.o
> mxmymz.o remakestr.o xcSelect.o readisodata.o lighting.o xcGLparam.o
> colorplane.o isorender.o polygonise.o polygonise_auxil.o xcIsoSurf.o
> voronoi.o xcBz.o xcSuperCell.o xcPrimitives.o setOpenGLState.o memory.o
> isoMalloc.o isoInterpolate.o readPlvertex.o splineInt.o paraSize.o
> isoline.o
> xcIsoSpaceSel.o cells.o xcWigner.o xcTogl.o datagrid.o sInfo.o
> xcIsoDataGrid.o xcColorScheme.o xcReadXSF.o xcF3toI4.o xcFractCoor.o
> signal.o MarchCubes.o isosurf.o xcMolSurf.o cryNewContext.o fs.o
> cryDispFunc.o cryDispFuncMultiFS.o crySetProj.o crySurfArgs.o crySurf.o
> cryTransform.o cryClip.o cryTogl.o forces.o xcForces.o gl2psPrintTogl.o
> ppmPrintTogl.o lcasi.o lcasif.o xcFont.o fog.o writeXSF.o hbonds.o
> xcHBonds.o linear.o realTimeMovie.o getline.o togl.o gl2ps.o
> sgiRasterFont.o
> sgiAux.o \
> -o xcrys
> /home/jy/Download/XCrySDen-1.5.21-src-all/external/lib/libtk8.5.a
> /home/jy/Download/XCrySDen-1.5.21-src-all/external/lib/libtcl8.5.a
> /home/jy/Download/XCrySDen-1.5.21-src-all/external/lib/libGLU.a
> /home/jy/Download/XCrySDen-1.5.21-src-all/external/lib/libGL.a
> -L/usr/lib/X11/xdm/ -lXmu -lX11 -lXext -lpthread -lm -ldl
> /usr/bin/ld: cannot find -lXmu
> collect2: ld returned 1 exit status
> make[2]: *** [xcrys] Error 1
> make[2]: Leaving directory `/home/jy/Download/XCrySDen-1.5.21-src-all/C'
> make[1]: *** [compile] Error 2
> make[1]: Leaving directory `/home/jy/Download/XCrySDen-1.5.21-src-all/C'
> make: *** [src-C] Error 2
>
>
> Considering that the the X11 lib may not be found so I made some changes to
> the Make.sys, where I replaced the line "X_LIB = -L/usr/lib/X11/xdm
> -lXmu -lX11 -lXext -lpthread" with "X_LIB =
> /usr/lib/X11/xdm/libXdmGreet.so -lXmu -lX11 -lXext -lpthread". Because I
> installed X11 already.
>
> Then type "make all", again. But error occurs again:
>
> #------------------------------#
> # #
> # Compiling XCRYSDEN C-code #
> # #
> #------------------------------#
>
> cd C; make "TOPDIR=/home/jy/Download/XCrySDen-1.5.21-src-all" compile
> make[1]: Entering directory `/home/jy/Download/XCrySDen-1.5.21-src-all/C'
> make TOPDIR=/home/jy/Download/XCrySDen-1.5.21-src-all
> make[2]: Entering directory `/home/jy/Download/XCrySDen-1.5.21-src-all/C'
> gcc -static -ansi -funroll-loops -DUSE_FONTS detnsplit.o xcAppInit.o
> xcballstick.o xcviewport.o xcLabels.o vectors.o xcDisplayFunc2.o
> xcAtomAdd.o
> loadValues.o hpsort.o auxilproc.o xcdebug.o 3D.o xcDisplayFunc.o readstrf.o
> mxmymz.o remakestr.o xcSelect.o readisodata.o lighting.o xcGLparam.o
> colorplane.o isorender.o polygonise.o polygonise_auxil.o xcIsoSurf.o
> voronoi.o xcBz.o xcSuperCell.o xcPrimitives.o setOpenGLState.o memory.o
> isoMalloc.o isoInterpolate.o readPlvertex.o splineInt.o paraSize.o
> isoline.o
> xcIsoSpaceSel.o cells.o xcWigner.o xcTogl.o datagrid.o sInfo.o
> xcIsoDataGrid.o xcColorScheme.o xcReadXSF.o xcF3toI4.o xcFractCoor.o
> signal.o MarchCubes.o isosurf.o xcMolSurf.o cryNewContext.o fs.o
> cryDispFunc.o cryDispFuncMultiFS.o crySetProj.o crySurfArgs.o crySurf.o
> cryTransform.o cryClip.o cryTogl.o forces.o xcForces.o gl2psPrintTogl.o
> ppmPrintTogl.o lcasi.o lcasif.o xcFont.o fog.o writeXSF.o hbonds.o
> xcHBonds.o linear.o realTimeMovie.o getline.o togl.o gl2ps.o
> sgiRasterFont.o
> sgiAux.o \
> -o xcrys
> /home/jy/Download/XCrySDen-1.5.21-src-all/external/lib/libtk8.5.a
> /home/jy/Download/XCrySDen-1.5.21-src-all/external/lib/libtcl8.5.a
> /home/jy/Download/XCrySDen-1.5.21-src-all/external/lib/libGLU.a
> /home/jy/Download/XCrySDen-1.5.21-src-all/external/lib/libGL.a
> /usr/lib/X11/xdm/libXdmGreet.so -lXmu -lX11 -lXext -lpthread -lm -ldl
> /usr/bin/ld: attempted static link of dynamic object
> `/usr/lib/X11/xdm/libXdmGreet.so'
> collect2: ld returned 1 exit status
> make[2]: *** [xcrys] Error 1
> make[2]: Leaving directory `/home/jy/Download/XCrySDen-1.5.21-src-all/C'
> make[1]: *** [compile] Error 2
> make[1]: Leaving directory `/home/jy/Download/XCrySDen-1.5.21-src-all/C'
> make: *** [src-C] Error 2
>
>
> At this time, it seems hard for me to find out the specific error for the
> compiling. What's wrong with the X11 lib or some other libs? Thank you in
> advance.
>
> BTW, the Make.sys file is attached.
>
> --
> Sincerely yours
>
> Jiaye Li
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--
Sincerely yours
Jiaye Li
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