[Pw_forum] openmpi-1.3

Mahmoud Payami Shabestari mpayami at aeoi.org.ir
Sun Feb 15 04:34:56 CET 2009


Dear Axel, Eyvaz, and Paolo,

Thank you so much for your comments. 
Paolo's suggestion resolved my problem.
In fact, I created two versions "openmpi_1.2.8" and "openmpi_1.3", and
correspondingly two versions "QE-1.2.8" and "QE-1.3". In all preparations,
I used the same intel compiler 11 (lc_prof_11), and in each case I
modified ".bashtc" for "LD_LIBRARY_PATH" and "openmpi/bin".

using two pools, each with two cores, I got the message:


<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
[mahmoud at node0]$ mpirun --hostfile myhost -np 4
/opt/espresso404_32/bin/pw.x < Au2.in

     Program PWSCF     v.4.0.4  starts ...
     Today is 15Feb2009 at  3:56:30 

     Parallel version (MPI)

     Number of processors in use:       4
     R & G space division:  proc/pool =    4

     For Norm-Conserving or Ultrasoft (Vanderbilt) Pseudopotentials or PAW

     Current dimensions of program pwscf are:
     Max number of different atomic species (ntypx) = 10
     Max number of k-points (npk) =  40000
     Max angular momentum in pseudopotentials (lmaxx) =  3

 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
     from  read_namelists  : error #         1
      reading namelist control 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

     stopping ...

 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
     from  read_namelists  : error #         1
      reading namelist control 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

     stopping ...

 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
     from  read_namelists  : error #         1

      reading namelist control 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

     stopping ...
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
     from  read_namelists  : error #         1
      reading namelist control 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

     stopping ...
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD 
with errorcode 0.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun has exited due to process rank 2 with PID 19267 on
node condmat2 exiting without calling "finalize". This may
have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
--------------------------------------------------------------------------
[node0:24707] 3 more processes have sent help message help-mpi-api.txt /
mpi-abort
[node0:24707] Set MCA parameter "orte_base_help_aggregate" to 0 to see all
help / error messages
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<

Best regards,
               Mahmoud








> On Feb 14, 2009, at 18:01 , Mahmoud Payami wrote:
> 
> > Has anybody succeeded running QE using openmpi-1.3?
> > I get the following error message: [...]
> > from read_namelists: error  #1
> > reading namelist control [...]
> > On the other hand it is ok with openmpi-1.2.8.
> 
> try pw.x/cp.x -inp "input file name" . It happens more often than
> not that MPI installations are confused by input redirection
> (pw.x/cp.x < "input file name"). Maybe your newer version is
> not installed in exactly the same way as your previous one
> 
> Paolo
> ---
> Paolo Giannozzi, Democritos and University of Udine, Italy
> 
> 
> _______________________________________________
> Pw_forum mailing list
> Pw_forum at pwscf.org
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